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The map label for this gene is xylA [H]

Identifier: 23501436

GI number: 23501436

Start: 541507

End: 542814

Strand: Reverse

Name: xylA [H]

Synonym: BR0547

Alternate gene names: 23501436

Gene position: 542814-541507 (Counterclockwise)

Preceding gene: 23501437

Following gene: 23501430

Centisome position: 25.75

GC content: 56.12

Gene sequence:

>1308_bases
ATGAGTACGGGATTTTTCGGCGATATTCAGAAGGTGCGCTATGAGGGGCCGGAGAGCGACAATCCGCTGGCCTTCCGCCA
TTATAATGCAGATGAAATCGTGCTCGGCAAACGCATGGAAGACCATTTGCGCTTTGCGGTGGCCTATTGGCACAGTTTCG
CCTGGGAGGGTGGCGATCCGTTCGGCGGGCGCACCTTCGACCGGCCGTGGTTTTCCAACGAGATCGATGCGGCAAAACTC
AAGGCCGATGTCGCCTTTGAATTCTTCTCCCTGCTCGGCGCACCTTATTACTGCTTCCACGATGCCGATGTGCGGCCAGA
GGGCCGCAATTTTGCGGAAAACACGCGCTATCTCAATGAAATTGTCGATATTTTCGAGAAGAAGCAGGCCGAAACCGGCA
TGAAACTGCTCTGGGGCACGGCCAATCTTTTTTCCAACCGGCGCTATATGGCGGGTGCGGCCACAAATCCCGATCCTGAT
GTCTTCGCTTTTGCCGCTGCAACAGTGAAGACCTGTATCGACGCCACCAAGCGGCTCGGTGGAGAGAATTACGTGCTTTG
GGGCGGTCGCGAAGGCTATGAAACCCTGCTCAATACCGATCTTTCGCGTGAACTCGACCATATGGGCCGGTTCCTTAGCC
TCGTGGTGGAATACAAGCACAAAATCGGCTTCAAGGGCACGATCCTGATCGAGCCCAAGCCGCAGGAGCCGACCAAACAT
CAGTATGATTACGATGTCGCGACGGTTTACGGCTTCCTCAAGCGTTACGGTCTGGAAAACGAGGTGAAGGTCAATATCGA
GCAGGGCCATGCCATTCTGGCCGGTCACTCGTTCGAGCATGAGCTGGCGCTTGCCCGCACACTTGGCATTTTCGGCTCCA
TCGACATGAACCGCAACGATTACCAATCCGGCTGGGACACCGATCAGTTCCCGAACAATGTGCCGGAGATGGCGCTGGCC
TATTATCAGGTTCTGCTGGCAGGCGGCTTCACGACCGGCGGCACGAATTTCGACGCCAAGCTGCGCCGCCAGTCGCTTGA
TTCGCAGGATCTGCTAATCGGCCATATTGGCGGCATGGATTGCTGTGCACGCGGACTAAAAGCAGCCGCGCGGATGCTTG
AAGACGGCGCTTTATCCAAGCCGCTTGATGAGCGTTATGCGGGCTGGAACGGCGAGTTCGGCAAGAGGCTTCTGAGCGGC
CTTTCGCTGGACCAGATCGCGGGTGAAGTCGAAGCGAAAGACATCAATCCGCAGCCGAAATCCGGCCGTCAGGAATATCT
GGAAAACATCGTCAATCACTACGTTTGA

Upstream 100 bases:

>100_bases
GAAGCCTATCAGCGTTATCACGCGCTTTATCCGGCGCTCCATGCACTTGACTAAACCCTGTCGCGGACGGTGACAATTTC
AGAACCTTGAGAGGATGAAC

Downstream 100 bases:

>100_bases
ACCCCACGAAACAGAAAGGGCGCCAGCGGTGCCCTTTCGCTTTAAAGCTTAACCCAACCACCATTTTTCCGTGACGAGCG
CACGCAGGCATCAATGAAAG

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MSTGFFGDIQKVRYEGPESDNPLAFRHYNADEIVLGKRMEDHLRFAVAYWHSFAWEGGDPFGGRTFDRPWFSNEIDAAKL
KADVAFEFFSLLGAPYYCFHDADVRPEGRNFAENTRYLNEIVDIFEKKQAETGMKLLWGTANLFSNRRYMAGAATNPDPD
VFAFAAATVKTCIDATKRLGGENYVLWGGREGYETLLNTDLSRELDHMGRFLSLVVEYKHKIGFKGTILIEPKPQEPTKH
QYDYDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALA
YYQVLLAGGFTTGGTNFDAKLRRQSLDSQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSG
LSLDQIAGEVEAKDINPQPKSGRQEYLENIVNHYV

Sequences:

>Translated_435_residues
MSTGFFGDIQKVRYEGPESDNPLAFRHYNADEIVLGKRMEDHLRFAVAYWHSFAWEGGDPFGGRTFDRPWFSNEIDAAKL
KADVAFEFFSLLGAPYYCFHDADVRPEGRNFAENTRYLNEIVDIFEKKQAETGMKLLWGTANLFSNRRYMAGAATNPDPD
VFAFAAATVKTCIDATKRLGGENYVLWGGREGYETLLNTDLSRELDHMGRFLSLVVEYKHKIGFKGTILIEPKPQEPTKH
QYDYDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALA
YYQVLLAGGFTTGGTNFDAKLRRQSLDSQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSG
LSLDQIAGEVEAKDINPQPKSGRQEYLENIVNHYV
>Mature_434_residues
STGFFGDIQKVRYEGPESDNPLAFRHYNADEIVLGKRMEDHLRFAVAYWHSFAWEGGDPFGGRTFDRPWFSNEIDAAKLK
ADVAFEFFSLLGAPYYCFHDADVRPEGRNFAENTRYLNEIVDIFEKKQAETGMKLLWGTANLFSNRRYMAGAATNPDPDV
FAFAAATVKTCIDATKRLGGENYVLWGGREGYETLLNTDLSRELDHMGRFLSLVVEYKHKIGFKGTILIEPKPQEPTKHQ
YDYDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAY
YQVLLAGGFTTGGTNFDAKLRRQSLDSQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGL
SLDQIAGEVEAKDINPQPKSGRQEYLENIVNHYV

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=435, Percent_Identity=62.7586206896552, Blast_Score=577, Evalue=1e-166,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 48975; Mature: 48844

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGFFGDIQKVRYEGPESDNPLAFRHYNADEIVLGKRMEDHLRFAVAYWHSFAWEGGDP
CCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCC
FGGRTFDRPWFSNEIDAAKLKADVAFEFFSLLGAPYYCFHDADVRPEGRNFAENTRYLNE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
IVDIFEKKQAETGMKLLWGTANLFSNRRYMAGAATNPDPDVFAFAAATVKTCIDATKRLG
HHHHHHHHHHHCCCEEEEEHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GENYVLWGGREGYETLLNTDLSRELDHMGRFLSLVVEYKHKIGFKGTILIEPKPQEPTKH
CCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
QYDYDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRND
CCCCHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHEEECCCCCC
YQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDSQDLLIGHIGGMD
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCHH
CCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPK
HHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCC
SGRQEYLENIVNHYV
CCHHHHHHHHHHHCC
>Mature Secondary Structure 
STGFFGDIQKVRYEGPESDNPLAFRHYNADEIVLGKRMEDHLRFAVAYWHSFAWEGGDP
CCCCCCCHHHHHCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCC
FGGRTFDRPWFSNEIDAAKLKADVAFEFFSLLGAPYYCFHDADVRPEGRNFAENTRYLNE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
IVDIFEKKQAETGMKLLWGTANLFSNRRYMAGAATNPDPDVFAFAAATVKTCIDATKRLG
HHHHHHHHHHHCCCEEEEEHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GENYVLWGGREGYETLLNTDLSRELDHMGRFLSLVVEYKHKIGFKGTILIEPKPQEPTKH
CCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
QYDYDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRND
CCCCHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHEEECCCCCC
YQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDSQDLLIGHIGGMD
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCHH
CCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPK
HHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCC
SGRQEYLENIVNHYV
CCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA