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The map label for this gene is yxkH [H]

Identifier: 23501227

GI number: 23501227

Start: 333085

End: 333786

Strand: Reverse

Name: yxkH [H]

Synonym: BR0320

Alternate gene names: 23501227

Gene position: 333786-333085 (Counterclockwise)

Preceding gene: 23501228

Following gene: 23501226

Centisome position: 15.84

GC content: 57.26

Gene sequence:

>702_bases
ATGCCTGTACCTATTCTTTTGTATCACCAGATCGCGCCATTACCGGCCAAAAACATTCCATTCCGCGGCTTGCTGGTTCA
TCCTGACCGCTTCCGCAGCCAGATGCGCTGGCTGAAGAGGCTCGGCTATCAAGGTCTCTCGCTGCGCGATGCCATGCCCT
ATATCAAGGGTGAAAAGACCGGAAAAGTGGCCGTCATCACCTTTGATGACGGTTATCTCAATGTGCTGGAGAATGCCGGA
CCTGTTCTTGCCGAATACGGTTTTACGGCCACCAATTATTTTGTGGCCAACCAGGTTGGCGGCAGCAATGTCTGGGATCA
GCCCATCGGCGTGCCGAAGACGCCCTGCATGTCGGTGGCACAACTACGTGAATGGGCGGATCTCGGTCATGAGGTCGGCG
CCCATACCCTCGATCATGTTGCCCTGAGCAAAGTGCCCGAAGACGAGGCGCGCCACCAGATCGCCCAGTCGAAAACGGTG
CTGGAAGATATGCTCGGTACGCAGGTGACAAATTTTTGTTACCCTTATGGCGACAATACCCCAATCCACCGCGAGATGGT
GCGGGAAGCAGGCTATGAAACCGCAACAACGACGGTGCGGGCGCGGGCAAGGCCAACAGACGATCCGTTCGGCATTCCGC
GCATCTATGTGCGCCGGCGCGACCTGTGGCCCAAATTCGTGGTCCGGCTTCGCGTGCGCTAG

Upstream 100 bases:

>100_bases
TCCAGCACAAAAAGAACTTTTCAGACAAGCTTGCGCGCGAAATTTTACGCCCCATCTACCGGATGCGTGTGCGCGCCTAT
TCATCGAAATGAGTTTTATG

Downstream 100 bases:

>100_bases
GATTTCCATAAATCCCGACAAACGAACTGCCAGTTGATTGATCTAGCTCAATGCTCCTTCAAGCAAACGTGGCAAATTGC
CCGACCATGGGCCATGGACG

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MPVPILLYHQIAPLPAKNIPFRGLLVHPDRFRSQMRWLKRLGYQGLSLRDAMPYIKGEKTGKVAVITFDDGYLNVLENAG
PVLAEYGFTATNYFVANQVGGSNVWDQPIGVPKTPCMSVAQLREWADLGHEVGAHTLDHVALSKVPEDEARHQIAQSKTV
LEDMLGTQVTNFCYPYGDNTPIHREMVREAGYETATTTVRARARPTDDPFGIPRIYVRRRDLWPKFVVRLRVR

Sequences:

>Translated_233_residues
MPVPILLYHQIAPLPAKNIPFRGLLVHPDRFRSQMRWLKRLGYQGLSLRDAMPYIKGEKTGKVAVITFDDGYLNVLENAG
PVLAEYGFTATNYFVANQVGGSNVWDQPIGVPKTPCMSVAQLREWADLGHEVGAHTLDHVALSKVPEDEARHQIAQSKTV
LEDMLGTQVTNFCYPYGDNTPIHREMVREAGYETATTTVRARARPTDDPFGIPRIYVRRRDLWPKFVVRLRVR
>Mature_232_residues
PVPILLYHQIAPLPAKNIPFRGLLVHPDRFRSQMRWLKRLGYQGLSLRDAMPYIKGEKTGKVAVITFDDGYLNVLENAGP
VLAEYGFTATNYFVANQVGGSNVWDQPIGVPKTPCMSVAQLREWADLGHEVGAHTLDHVALSKVPEDEARHQIAQSKTVL
EDMLGTQVTNFCYPYGDNTPIHREMVREAGYETATTTVRARARPTDDPFGIPRIYVRRRDLWPKFVVRLRVR

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=233, Percent_Identity=29.6137339055794, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 26398; Mature: 26266

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVPILLYHQIAPLPAKNIPFRGLLVHPDRFRSQMRWLKRLGYQGLSLRDAMPYIKGEKT
CCCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCC
GKVAVITFDDGYLNVLENAGPVLAEYGFTATNYFVANQVGGSNVWDQPIGVPKTPCMSVA
CCEEEEEECCCHHHHHHCCCCEEHHCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHH
QLREWADLGHEVGAHTLDHVALSKVPEDEARHQIAQSKTVLEDMLGTQVTNFCYPYGDNT
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
PIHREMVREAGYETATTTVRARARPTDDPFGIPRIYVRRRDLWPKFVVRLRVR
CHHHHHHHHCCCCHHHHEEEECCCCCCCCCCCCHHEEEHHCCCHHHHHEECCC
>Mature Secondary Structure 
PVPILLYHQIAPLPAKNIPFRGLLVHPDRFRSQMRWLKRLGYQGLSLRDAMPYIKGEKT
CCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCC
GKVAVITFDDGYLNVLENAGPVLAEYGFTATNYFVANQVGGSNVWDQPIGVPKTPCMSVA
CCEEEEEECCCHHHHHHCCCCEEHHCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHH
QLREWADLGHEVGAHTLDHVALSKVPEDEARHQIAQSKTVLEDMLGTQVTNFCYPYGDNT
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
PIHREMVREAGYETATTTVRARARPTDDPFGIPRIYVRRRDLWPKFVVRLRVR
CHHHHHHHHCCCCHHHHEEEECCCCCCCCCCCCHHEEEHHCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]