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The map label for this gene is ycjZ [H]

Identifier: 23500975

GI number: 23500975

Start: 66671

End: 67564

Strand: Reverse

Name: ycjZ [H]

Synonym: BR0060

Alternate gene names: 23500975

Gene position: 67564-66671 (Counterclockwise)

Preceding gene: 23500984

Following gene: 23500974

Centisome position: 3.21

GC content: 59.84

Gene sequence:

>894_bases
ATGCAGAATGAGAACCTTCGCGACCTGAACGCCTTTGTCGCCGTGGCTGAAACCGGCAGCTTCACCCGCGCCGCCGCACA
GCTTGGCGTGTCGCAATCGGCGCTGAGCCAGACCATCCGCAATCTTGAGGAGCGGGTGGGTATTCGCCTGCTCAACCGGA
CAACCCGCTATGTCTCGCCAACGGAAGCAGGAGAGCGCCTTCTGGCCCAGGTCGGGCCTGCGCTGGCCGAGATTGCCAGC
GGATTTGCACAGATCGGCGAACTGCGCGAGCGCCCTTCCGGGACGGTTCGCCTATCGGCGGATGAATATGCGATCCAGAG
CGTTCTCTGGCCTGCACTGGAACGTTTTCTGGCCGAATTTCCCGATATTCATATCGAGCTTACCACCGATTATGGGCGCA
GCGACGTGGTGCGTGAACGCCAGGATGCTGGGGTGCGACGCGGAAAGCTCGTCTCCCGAGATATGATCGCACTGCGCATC
AGCCCCGATATTCCGATGGCGACAGTTGCAACGCCCGCCTTTCTGGAAAAGGGCGGAAAACCGAAACGGCCGCAGGATTT
GTCCGACCATGATTGCATCAATCTGCGGCTGCCGACCCATGGGGAATTCTTTGCCTGGACCTATAGCCGGCACGGGAAGG
ATATTCGCATCACGACACAGGGCCGTCTGGTCTTCACAAGCATAGCGCAGGTTCTACAGGCCTGCCTTGCCGGTTTCGGG
CTTGCCTATCTGCCACGCGATTATGCCGCCCGGCATATTGAGAGCGGCGCGCTTGTCGAAGTGCTGGCAGACTGGCGCAA
GACTTTCGAGGGCTACCACCTCTATTACCCGAACCGGCGACAGCACCCGCCAGCACTTGCTGCCTTGATTGAGGCATTAC
GCTATCGCGAATAA

Upstream 100 bases:

>100_bases
GTCTGGTGATCGCGCAGTTCAATTGACAGGGAATATAGCGGTGGGGGATGAATTCTATTAGGCTGTATAAAATGAATGCG
GTTATTAGCTGAGCTTATGA

Downstream 100 bases:

>100_bases
AGCGCATCCCGAAAACCGTCGCCACTTTCGGGAAACATGCTTCAGGGCAAATCGAACTTGCGTATCATCCGCCATTCAGG
ATTTTTTTGGCAAGCAAAGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MQNENLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLLAQVGPALAEIAS
GFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRI
SPDIPMATVATPAFLEKGGKPKRPQDLSDHDCINLRLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFG
LAYLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEALRYRE

Sequences:

>Translated_297_residues
MQNENLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLLAQVGPALAEIAS
GFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRI
SPDIPMATVATPAFLEKGGKPKRPQDLSDHDCINLRLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFG
LAYLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEALRYRE
>Mature_297_residues
MQNENLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLLAQVGPALAEIAS
GFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRI
SPDIPMATVATPAFLEKGGKPKRPQDLSDHDCINLRLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFG
LAYLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEALRYRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=296, Percent_Identity=48.3108108108108, Blast_Score=287, Evalue=5e-79,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=37.5862068965517, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI1786401, Length=259, Percent_Identity=32.8185328185328, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=28.9655172413793, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI145693193, Length=280, Percent_Identity=29.2857142857143, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1789440, Length=271, Percent_Identity=26.5682656826568, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081978, Length=270, Percent_Identity=28.5185185185185, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI157672245, Length=142, Percent_Identity=35.9154929577465, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786448, Length=293, Percent_Identity=28.6689419795222, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=125, Percent_Identity=36, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=28.8537549407115, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789173, Length=273, Percent_Identity=27.4725274725275, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787879, Length=151, Percent_Identity=36.4238410596026, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=158, Percent_Identity=29.1139240506329, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082132, Length=267, Percent_Identity=23.5955056179775, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=125, Percent_Identity=38.4, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790399, Length=143, Percent_Identity=33.5664335664336, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367136, Length=146, Percent_Identity=32.1917808219178, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789204, Length=275, Percent_Identity=24.7272727272727, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786713, Length=265, Percent_Identity=27.9245283018868, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33213; Mature: 33213

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNENLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSP
CCCCCHHHHHHHEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
TEAGERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEF
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
PDIHIELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGK
CCEEEEEECCCCCHHHHHHHHHCCCHHCCHHCCCEEEEEECCCCCHHHHCCHHHHHCCCC
PKRPQDLSDHDCINLRLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFG
CCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
LAYLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEALRYRE
HHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNENLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSP
CCCCCHHHHHHHEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
TEAGERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEF
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
PDIHIELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGK
CCEEEEEECCCCCHHHHHHHHHCCCHHCCHHCCCEEEEEECCCCCHHHHCCHHHHHCCCC
PKRPQDLSDHDCINLRLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFG
CCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
LAYLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEALRYRE
HHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]