Click here to switch to the map view.

The map label for this gene is jag [H]

Identifier: 23100948

GI number: 23100948

Start: 3627974

End: 3628591

Strand: Reverse

Name: jag [H]

Synonym: OB3493

Alternate gene names: 23100948

Gene position: 3628591-3627974 (Counterclockwise)

Preceding gene: 23100949

Following gene: 23100947

Centisome position: 99.95

GC content: 38.19

Gene sequence:

>618_bases
GTGAGAGAAGTAACTGCTAGCGGTCAATCAGTTGAAGAAGCAATTCAATCTGCATTAGCTCAATTGAATGCAAATAGAGA
TCAAGTAGAAATTGATGTAATTGATGAAGGAAAAAAAGGTGTATTAGGCATCTTTGGATCTAAACGCGCAGTTGTTAAGG
TTTGTATAGCGAAAGATCCCGTGCAAGAGACGGAAAAATTTATAAAAGAAGTAACTAGCAACATGAATCTCTCTATCGAT
TTAGATACTACTGTTGAGGGAAATCATGTCACTTATACCATGAATGGCGACCAAATCGCAGTATTAATTGGGAAACGAGG
ACAGACTTTGAACTCCCTTCAATATTTAGTCCATTTAGCGATCAACAGGCAAAGTGACACATACTATACAGTAACGCTTG
ATGCGGAGGGCTATCGAGGTAGAAGACAGGAAACATTAGAAACATTAGCTGCACGCATGGCGGATAAAGCTTTAAGAACA
AAGAAAACAGTTGTTTTAGAGCCAATGCCAGCATTTGAACGTAAGATTATTCACAGTATTTTACAGGATCGAAAAGATGT
TTCTACCTATTCCGATGGTGTGGAACCACATCGACATATTGTTATCAAACCATCGTAA

Upstream 100 bases:

>100_bases
GTTGGCATTGTATTGGGTAACAGGTAACATATTTATGGTGTTCCAAACGCTTCTTATTAATAAGCCGATGATGGCTAAAA
AATAATGGAGGGGAAAGATA

Downstream 100 bases:

>100_bases
GATAGCCATACAAGAGAATAAAAGTAAAAAGGCTGGAAAAAAATTCTTGTCAAAAGACGAATGAAAGCTAGAATAAGCGT
AAGAAATATACGGAGACTTC

Product: SpoIIIJ-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MREVTASGQSVEEAIQSALAQLNANRDQVEIDVIDEGKKGVLGIFGSKRAVVKVCIAKDPVQETEKFIKEVTSNMNLSID
LDTTVEGNHVTYTMNGDQIAVLIGKRGQTLNSLQYLVHLAINRQSDTYYTVTLDAEGYRGRRQETLETLAARMADKALRT
KKTVVLEPMPAFERKIIHSILQDRKDVSTYSDGVEPHRHIVIKPS

Sequences:

>Translated_205_residues
MREVTASGQSVEEAIQSALAQLNANRDQVEIDVIDEGKKGVLGIFGSKRAVVKVCIAKDPVQETEKFIKEVTSNMNLSID
LDTTVEGNHVTYTMNGDQIAVLIGKRGQTLNSLQYLVHLAINRQSDTYYTVTLDAEGYRGRRQETLETLAARMADKALRT
KKTVVLEPMPAFERKIIHSILQDRKDVSTYSDGVEPHRHIVIKPS
>Mature_205_residues
MREVTASGQSVEEAIQSALAQLNANRDQVEIDVIDEGKKGVLGIFGSKRAVVKVCIAKDPVQETEKFIKEVTSNMNLSID
LDTTVEGNHVTYTMNGDQIAVLIGKRGQTLNSLQYLVHLAINRQSDTYYTVTLDAEGYRGRRQETLETLAARMADKALRT
KKTVVLEPMPAFERKIIHSILQDRKDVSTYSDGVEPHRHIVIKPS

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 22853; Mature: 22853

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREVTASGQSVEEAIQSALAQLNANRDQVEIDVIDEGKKGVLGIFGSKRAVVKVCIAKDP
CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCEEEEEEECCCC
VQETEKFIKEVTSNMNLSIDLDTTVEGNHVTYTMNGDQIAVLIGKRGQTLNSLQYLVHLA
HHHHHHHHHHHHCCCEEEEEECCEECCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHE
INRQSDTYYTVTLDAEGYRGRRQETLETLAARMADKALRTKKTVVLEPMPAFERKIIHSI
EECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH
LQDRKDVSTYSDGVEPHRHIVIKPS
HHHHHHHHHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MREVTASGQSVEEAIQSALAQLNANRDQVEIDVIDEGKKGVLGIFGSKRAVVKVCIAKDP
CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCEEEEEEECCCC
VQETEKFIKEVTSNMNLSIDLDTTVEGNHVTYTMNGDQIAVLIGKRGQTLNSLQYLVHLA
HHHHHHHHHHHHCCCEEEEEECCEECCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHE
INRQSDTYYTVTLDAEGYRGRRQETLETLAARMADKALRTKKTVVLEPMPAFERKIIHSI
EECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH
LQDRKDVSTYSDGVEPHRHIVIKPS
HHHHHHHHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]