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The map label for this gene is ssb

Identifier: 23100933

GI number: 23100933

Start: 3613458

End: 3613943

Strand: Reverse

Name: ssb

Synonym: OB3478

Alternate gene names: 23100933

Gene position: 3613943-3613458 (Counterclockwise)

Preceding gene: 23100934

Following gene: 23100932

Centisome position: 99.54

GC content: 39.3

Gene sequence:

>486_bases
ATGTTAAATCGTGTCGTACTGGTAGGCAGGTTAACGAGGGATCCTGATTTACGCTATACACCAAATGGGGTTGCAGTTGC
CAATTTCAACATTGCTGTAAACAGACCTTTCTCGAATCAGCAAGGAAATCGCGAAGCAGACTTTATCAATTGTGTGATTT
GGCGACGTCCAGCTGAAAATCTAGCCAATTATATGAAAAAAGGAAGTATGGTTGGTGTTGACGGCCGAATTCAAACGAGA
AATTTTGAAGGCCAAGATGGAAAAACTGTCTACGTTACTGAAGTAGTAGCAGATAGTGTTCAATTCCTGGAAACAAAGGG
TTCTCAAGGTGGACAGGATTCATCTGGAGGTTACCAGCAAAACAGAAATCAGAACCAATATCAAAATCAAAACCAATATG
CATCTAATCAGAACCAAGATCAAGAGGACCCATTTAAAAATAATGGTGAACCAATTGATATCTCTGATGATGATTTACCG
TTTTAA

Upstream 100 bases:

>100_bases
CGAAGAAGCAATTAATGAATTTGACCGCCTAGCGAAGTTCAACGATGACATTATCCGTCATATGGCTATTAAAGATGAAC
AATAATAAGGAGTGGTTCTG

Downstream 100 bases:

>100_bases
TATAATGTTTGTTCAAAGAGGATAAACTTTCAAATCTAATTTTTAAGTGAAGGAGTGTATTAATATGGCAGCTCGTCGCG
GACGTGCAAAACGTCGTAAG

Product: single-strand DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MLNRVVLVGRLTRDPDLRYTPNGVAVANFNIAVNRPFSNQQGNREADFINCVIWRRPAENLANYMKKGSMVGVDGRIQTR
NFEGQDGKTVYVTEVVADSVQFLETKGSQGGQDSSGGYQQNRNQNQYQNQNQYASNQNQDQEDPFKNNGEPIDISDDDLP
F

Sequences:

>Translated_161_residues
MLNRVVLVGRLTRDPDLRYTPNGVAVANFNIAVNRPFSNQQGNREADFINCVIWRRPAENLANYMKKGSMVGVDGRIQTR
NFEGQDGKTVYVTEVVADSVQFLETKGSQGGQDSSGGYQQNRNQNQYQNQNQYASNQNQDQEDPFKNNGEPIDISDDDLP
F
>Mature_161_residues
MLNRVVLVGRLTRDPDLRYTPNGVAVANFNIAVNRPFSNQQGNREADFINCVIWRRPAENLANYMKKGSMVGVDGRIQTR
NFEGQDGKTVYVTEVVADSVQFLETKGSQGGQDSSGGYQQNRNQNQYQNQNQYASNQNQDQEDPFKNNGEPIDISDDDLP
F

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain

Homologues:

Organism=Escherichia coli, GI1790494, Length=116, Percent_Identity=36.2068965517241, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SSB_OCEIH (Q8CX55)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_694400.1
- ProteinModelPortal:   Q8CX55
- SMR:   Q8CX55
- GeneID:   1016033
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB3478
- NMPDR:   fig|221109.1.peg.3482
- HOGENOM:   HBG755544
- OMA:   VNKVIIL
- BioCyc:   OIHE221109:OB3478-MONOMER
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10302
- TIGRFAMs:   TIGR00621

Pfam domain/function: PF00436 SSB; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 18139; Mature: 18139

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRVVLVGRLTRDPDLRYTPNGVAVANFNIAVNRPFSNQQGNREADFINCVIWRRPAEN
CCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCHHH
LANYMKKGSMVGVDGRIQTRNFEGQDGKTVYVTEVVADSVQFLETKGSQGGQDSSGGYQQ
HHHHHHCCCEECCCCEEEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCC
NRNQNQYQNQNQYASNQNQDQEDPFKNNGEPIDISDDDLPF
CCCCCHHHCCHHHCCCCCCCCCCCCCCCCCEECCCCCCCCC
>Mature Secondary Structure
MLNRVVLVGRLTRDPDLRYTPNGVAVANFNIAVNRPFSNQQGNREADFINCVIWRRPAEN
CCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCHHH
LANYMKKGSMVGVDGRIQTRNFEGQDGKTVYVTEVVADSVQFLETKGSQGGQDSSGGYQQ
HHHHHHCCCEECCCCEEEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCC
NRNQNQYQNQNQYASNQNQDQEDPFKNNGEPIDISDDDLPF
CCCCCHHHCCHHHCCCCCCCCCCCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376