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The map label for this gene is ygiK [H]

Identifier: 23100860

GI number: 23100860

Start: 3540725

End: 3542032

Strand: Direct

Name: ygiK [H]

Synonym: OB3405

Alternate gene names: 23100860

Gene position: 3540725-3542032 (Clockwise)

Preceding gene: 23100859

Following gene: 23100862

Centisome position: 97.53

GC content: 40.67

Gene sequence:

>1308_bases
ATGGATGTAACTGTATGGACAGCCATTATATTATTTGGATCGTTTTTCTTACTCTTATTTATTGGCGTACCGATTGCCGT
AAGTATCACTATTTCTTCTTTTGTGTCTATTTTAATTCTACTTCCTATGACACCATCCTTATTAGCGGTGTCCCAACAAA
TCATTACCGGGCTAGATAGTACGGTGTTATTGGCACTTGTATTCTTTATGCTGGCGGGAAGTATTATGAATAATGGCGGG
ATTGCCGATCGGCTGATTAATTTAGCAAAGTTAATTGGTGGTAGAATGTCCGGTTCACTCGCACATACGAATATTATCGG
AAATACACTGTTTGGCGCGATATCAGGTTCAGCAATTGCCGCAGCCGCAACAATGGGACGGATTATGCACCCTCAAGAGA
AAAAAGCAGGTTATGACCCTTCGTATGCAGCAGCTGTAAATATCGCTTCCGCACCGACGGGATTAATTATCCCTCCAAGC
GGGATGCCGATTATTTACTCTCTATTAACCGGTGGCACATCGATTGGTGCTTTATTTATCGCAGGGTACTTACCTGGTCT
GTTGATGATTGCGTTACTCATGATCGTCGCCTATATATTAGCGAAAAAAGCCAAATATCCTGTATCCAAACCAATCAGTG
GCGGCGAATCCTTCAAAGTAATACTTCAAGCGATCCCTAGTTTATTATTAATTATTATTGTCATAGGTGGAATTGCCGGA
GGGATTTTTACAGCAACAGAAGGAGCTGCAGTAGCTGTACTATATGCTTCTATCCTTAGCGTTATTTACCGTCAGTTAAA
ACTAACCGACATCCCTAAAATACTTAGAGAAACGACGATTTATTCTGGTATTATCATGTTATTAATAGGAGCATCTACTG
CGATGTCCTGGGTACTTGCATACGCAGGTATACCACAGGCAATTACAAGCAGTCTATTAAGCATTACCGATAATACAACC
ATTCTACTGTTGATCATGTTAGTGATTTTACTAGTAGTTGGAACCTTTATGGATATTGCACCAGCGCTATTAATTTTCAC
ACCGATATTCTTCCCGGTCGCAACACAAATGGGCATCGATCCCGTCCATTTTGGAATGATAATGGCTGTAGCTCTTGCTA
TTGGAGTAACCACTCCGCCAATTGGGACCGTGTTATTTATCGGAAGTAGTGTCAGCGGAGTACCTATCGAAAAAATCATA
CCGAAGCTGCTCATCTTCTATATTCCATTAATCGTAGCGCTATTACTCGTTGCGTTTATTCCAGAAATCAGCTTATTCTT
ACCAAAGTTATTTGGTTTATTGGATTAG

Upstream 100 bases:

>100_bases
TTCCTATTTGTGGAGTCATCATCATTTTCTATCAAATCATCCATATTTCGGAACGACAGGGCATCGAACAATCCAATTCA
TTTGAAAAGGGTGAGAATAC

Downstream 100 bases:

>100_bases
GTGAAGATTCATCTACTAAGGAGATTACAGGATAGAATAACTGAGCTATGAACTAAACATAGCTCGGTTATTAATTTGGA
TACACATCTCAAGTAAACTC

Product: C4-dicarboxylate transport system permease large protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MDVTVWTAIILFGSFFLLLFIGVPIAVSITISSFVSILILLPMTPSLLAVSQQIITGLDSTVLLALVFFMLAGSIMNNGG
IADRLINLAKLIGGRMSGSLAHTNIIGNTLFGAISGSAIAAAATMGRIMHPQEKKAGYDPSYAAAVNIASAPTGLIIPPS
GMPIIYSLLTGGTSIGALFIAGYLPGLLMIALLMIVAYILAKKAKYPVSKPISGGESFKVILQAIPSLLLIIIVIGGIAG
GIFTATEGAAVAVLYASILSVIYRQLKLTDIPKILRETTIYSGIIMLLIGASTAMSWVLAYAGIPQAITSSLLSITDNTT
ILLLIMLVILLVVGTFMDIAPALLIFTPIFFPVATQMGIDPVHFGMIMAVALAIGVTTPPIGTVLFIGSSVSGVPIEKII
PKLLIFYIPLIVALLLVAFIPEISLFLPKLFGLLD

Sequences:

>Translated_435_residues
MDVTVWTAIILFGSFFLLLFIGVPIAVSITISSFVSILILLPMTPSLLAVSQQIITGLDSTVLLALVFFMLAGSIMNNGG
IADRLINLAKLIGGRMSGSLAHTNIIGNTLFGAISGSAIAAAATMGRIMHPQEKKAGYDPSYAAAVNIASAPTGLIIPPS
GMPIIYSLLTGGTSIGALFIAGYLPGLLMIALLMIVAYILAKKAKYPVSKPISGGESFKVILQAIPSLLLIIIVIGGIAG
GIFTATEGAAVAVLYASILSVIYRQLKLTDIPKILRETTIYSGIIMLLIGASTAMSWVLAYAGIPQAITSSLLSITDNTT
ILLLIMLVILLVVGTFMDIAPALLIFTPIFFPVATQMGIDPVHFGMIMAVALAIGVTTPPIGTVLFIGSSVSGVPIEKII
PKLLIFYIPLIVALLLVAFIPEISLFLPKLFGLLD
>Mature_435_residues
MDVTVWTAIILFGSFFLLLFIGVPIAVSITISSFVSILILLPMTPSLLAVSQQIITGLDSTVLLALVFFMLAGSIMNNGG
IADRLINLAKLIGGRMSGSLAHTNIIGNTLFGAISGSAIAAAATMGRIMHPQEKKAGYDPSYAAAVNIASAPTGLIIPPS
GMPIIYSLLTGGTSIGALFIAGYLPGLLMIALLMIVAYILAKKAKYPVSKPISGGESFKVILQAIPSLLLIIIVIGGIAG
GIFTATEGAAVAVLYASILSVIYRQLKLTDIPKILRETTIYSGIIMLLIGASTAMSWVLAYAGIPQAITSSLLSITDNTT
ILLLIMLVILLVVGTFMDIAPALLIFTPIFFPVATQMGIDPVHFGMIMAVALAIGVTTPPIGTVLFIGSSVSGVPIEKII
PKLLIFYIPLIVALLLVAFIPEISLFLPKLFGLLD

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=404, Percent_Identity=31.4356435643564, Blast_Score=184, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45495; Mature: 45495

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVTVWTAIILFGSFFLLLFIGVPIAVSITISSFVSILILLPMTPSLLAVSQQIITGLDS
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
TVLLALVFFMLAGSIMNNGGIADRLINLAKLIGGRMSGSLAHTNIIGNTLFGAISGSAIA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHH
AAATMGRIMHPQEKKAGYDPSYAAAVNIASAPTGLIIPPSGMPIIYSLLTGGTSIGALFI
HHHHHHHHCCCHHHCCCCCCCHHHHEEECCCCCCEEECCCCCHHHHHHHHCCCHHHHHHH
AGYLPGLLMIALLMIVAYILAKKAKYPVSKPISGGESFKVILQAIPSLLLIIIVIGGIAG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GIFTATEGAAVAVLYASILSVIYRQLKLTDIPKILRETTIYSGIIMLLIGASTAMSWVLA
CHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAGIPQAITSSLLSITDNTTILLLIMLVILLVVGTFMDIAPALLIFTPIFFPVATQMGID
HHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PVHFGMIMAVALAIGVTTPPIGTVLFIGSSVSGVPIEKIIPKLLIFYIPLIVALLLVAFI
HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
PEISLFLPKLFGLLD
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MDVTVWTAIILFGSFFLLLFIGVPIAVSITISSFVSILILLPMTPSLLAVSQQIITGLDS
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
TVLLALVFFMLAGSIMNNGGIADRLINLAKLIGGRMSGSLAHTNIIGNTLFGAISGSAIA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHH
AAATMGRIMHPQEKKAGYDPSYAAAVNIASAPTGLIIPPSGMPIIYSLLTGGTSIGALFI
HHHHHHHHCCCHHHCCCCCCCHHHHEEECCCCCCEEECCCCCHHHHHHHHCCCHHHHHHH
AGYLPGLLMIALLMIVAYILAKKAKYPVSKPISGGESFKVILQAIPSLLLIIIVIGGIAG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GIFTATEGAAVAVLYASILSVIYRQLKLTDIPKILRETTIYSGIIMLLIGASTAMSWVLA
CHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAGIPQAITSSLLSITDNTTILLLIMLVILLVVGTFMDIAPALLIFTPIFFPVATQMGID
HHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PVHFGMIMAVALAIGVTTPPIGTVLFIGSSVSGVPIEKIIPKLLIFYIPLIVALLLVAFI
HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
PEISLFLPKLFGLLD
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]