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The map label for this gene is ycdC [C]

Identifier: 23100835

GI number: 23100835

Start: 3517367

End: 3517882

Strand: Direct

Name: ycdC [C]

Synonym: OB3380

Alternate gene names: 23100835

Gene position: 3517367-3517882 (Clockwise)

Preceding gene: 23100826

Following gene: 23100836

Centisome position: 96.88

GC content: 35.08

Gene sequence:

>516_bases
ATGGTTAGGTCAAGCAAAGAAAATCGGAAAGAAGAAATCCTTGAAGCAGGATTAGAAGTATTCGCAAAAAGAGGTTATCA
TAACACAACTACCGCACATGTTGCAGAAAAAGCGGGCATATCCCAACCATATGTATTTAGATTTTTTAAGACAAAGGAAA
AATTGTTTATTGCAGCTTTAGATCGAGCATTTGAAAGGATTCTTCTGGCTTTTAAAAATGTCCATTCGAGTCCGGAACAG
CTCGTTGATAAAATGATTGAAGCATATGAAGAACTTTCAGAATTGCACCCTAATGAAATTGCACTACAGGTGATAGGAAT
TTCGGTAACAGAAGAAGCTATACGAAATGCAACAAAAAAAGGATTATCCAACATTCAAAACTACACTCTAGAACGATTTA
AAGACGCTGGAATAGAAAATGTGGAGAGTGAAGTTACGACGTTCTTAGCAAGAGGAATGTTATGCAATATTTCTTATTTC
TTAGACCTTCCAGAGCTTATAGCAAAAAATAAATAA

Upstream 100 bases:

>100_bases
CTATAATTCCCTACCCAGCAAGAAAATTTGTATTTGCATTTAATCGAATTGTTAATTACAATGTAATTGATCAATAAATA
ACTAAAAGTAGGTGTATGGT

Downstream 100 bases:

>100_bases
TCAAAACTCGATTATTTATTTTTTGCGATTTTAGTTATTGATTAATCACTTACTAATGTGAGGAGCTGAAGAGATGAAAC
TAAACAAAATCGACTTTGTT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Regulatory Protein TetR

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MVRSSKENRKEEILEAGLEVFAKRGYHNTTTAHVAEKAGISQPYVFRFFKTKEKLFIAALDRAFERILLAFKNVHSSPEQ
LVDKMIEAYEELSELHPNEIALQVIGISVTEEAIRNATKKGLSNIQNYTLERFKDAGIENVESEVTTFLARGMLCNISYF
LDLPELIAKNK

Sequences:

>Translated_171_residues
MVRSSKENRKEEILEAGLEVFAKRGYHNTTTAHVAEKAGISQPYVFRFFKTKEKLFIAALDRAFERILLAFKNVHSSPEQ
LVDKMIEAYEELSELHPNEIALQVIGISVTEEAIRNATKKGLSNIQNYTLERFKDAGIENVESEVTTFLARGMLCNISYF
LDLPELIAKNK
>Mature_171_residues
MVRSSKENRKEEILEAGLEVFAKRGYHNTTTAHVAEKAGISQPYVFRFFKTKEKLFIAALDRAFERILLAFKNVHSSPEQ
LVDKMIEAYEELSELHPNEIALQVIGISVTEEAIRNATKKGLSNIQNYTLERFKDAGIENVESEVTTFLARGMLCNISYF
LDLPELIAKNK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19469; Mature: 19469

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRSSKENRKEEILEAGLEVFAKRGYHNTTTAHVAEKAGISQPYVFRFFKTKEKLFIAAL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
DRAFERILLAFKNVHSSPEQLVDKMIEAYEELSELHPNEIALQVIGISVTEEAIRNATKK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHH
GLSNIQNYTLERFKDAGIENVESEVTTFLARGMLCNISYFLDLPELIAKNK
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure
MVRSSKENRKEEILEAGLEVFAKRGYHNTTTAHVAEKAGISQPYVFRFFKTKEKLFIAAL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
DRAFERILLAFKNVHSSPEQLVDKMIEAYEELSELHPNEIALQVIGISVTEEAIRNATKK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHH
GLSNIQNYTLERFKDAGIENVESEVTTFLARGMLCNISYFLDLPELIAKNK
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA