Click here to switch to the map view.

The map label for this gene is ywrC [H]

Identifier: 23100726

GI number: 23100726

Start: 3408212

End: 3408661

Strand: Direct

Name: ywrC [H]

Synonym: OB3271

Alternate gene names: 23100726

Gene position: 3408212-3408661 (Clockwise)

Preceding gene: 23100717

Following gene: 23100727

Centisome position: 93.88

GC content: 36.44

Gene sequence:

>450_bases
ATGAAACTAGATAACATTGACAAAAAGCTATTAGAAGAGCTTTCAGAAGATGGCCGCTTATCGTATGTCGAGCTGGCAGA
AAAGGTTGGCTTATCTCGTGTTGCGGTAAAGGATCGTATTAAAAATTTAAAAGAAAAAGGTGTCATTGAAAAGTTTACGG
TGGTTATCAATTCAGAGAAATTCGGAAAACAAGTGTCTGCTTTTTTTGATATAGATGTCGAACCAAAACAATTGCAGGAA
GTTGCCCAAAATCTAGCTAATCACCCGCAAGTGGCTAGTATCTATCAAATGACTGGACCGAGCACCTTACATACACATGT
ATTAGTGGAGGATTTTCAGAAATTAGAAGTGTTTATTAATGAAGAATTGTATTCAGTAGAAGGTATTACACGTGTCGAAA
GCTCGATAATATTAAAGCGCTTCAAAAGTCGTACTGGATTTAAGTTGTAG

Upstream 100 bases:

>100_bases
TTTATGTTTCGGCGCCAAAGAGATAGCATGTTGTTTTGCTTCATGTTATATTCTGTTAAACTACATTTAGGGTGAAAATT
AGGATAGGAGCCGAAAAACA

Downstream 100 bases:

>100_bases
AGGATGAATGGTTTGAAGTTAAAGAATGGAATACGGGGAATTTTACTGTGGTTGAACGGTAGAAAATGTAAGGATTTTTA
TTATGACTGTATATCAATAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKLDNIDKKLLEELSEDGRLSYVELAEKVGLSRVAVKDRIKNLKEKGVIEKFTVVINSEKFGKQVSAFFDIDVEPKQLQE
VAQNLANHPQVASIYQMTGPSTLHTHVLVEDFQKLEVFINEELYSVEGITRVESSIILKRFKSRTGFKL

Sequences:

>Translated_149_residues
MKLDNIDKKLLEELSEDGRLSYVELAEKVGLSRVAVKDRIKNLKEKGVIEKFTVVINSEKFGKQVSAFFDIDVEPKQLQE
VAQNLANHPQVASIYQMTGPSTLHTHVLVEDFQKLEVFINEELYSVEGITRVESSIILKRFKSRTGFKL
>Mature_149_residues
MKLDNIDKKLLEELSEDGRLSYVELAEKVGLSRVAVKDRIKNLKEKGVIEKFTVVINSEKFGKQVSAFFDIDVEPKQLQE
VAQNLANHPQVASIYQMTGPSTLHTHVLVEDFQKLEVFINEELYSVEGITRVESSIILKRFKSRTGFKL

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=28, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=23.7762237762238, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR013199
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08280 HTH_Mga [H]

EC number: NA

Molecular weight: Translated: 17010; Mature: 17010

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDNIDKKLLEELSEDGRLSYVELAEKVGLSRVAVKDRIKNLKEKGVIEKFTVVINSEK
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHEECCHH
FGKQVSAFFDIDVEPKQLQEVAQNLANHPQVASIYQMTGPSTLHTHVLVEDFQKLEVFIN
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EELYSVEGITRVESSIILKRFKSRTGFKL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKLDNIDKKLLEELSEDGRLSYVELAEKVGLSRVAVKDRIKNLKEKGVIEKFTVVINSEK
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHEECCHH
FGKQVSAFFDIDVEPKQLQEVAQNLANHPQVASIYQMTGPSTLHTHVLVEDFQKLEVFIN
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EELYSVEGITRVESSIILKRFKSRTGFKL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]