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The map label for this gene is sodC2 [H]

Identifier: 23100535

GI number: 23100535

Start: 3202413

End: 3202997

Strand: Reverse

Name: sodC2 [H]

Synonym: OB3080

Alternate gene names: 23100535

Gene position: 3202997-3202413 (Counterclockwise)

Preceding gene: 23100536

Following gene: 23100533

Centisome position: 88.22

GC content: 40.34

Gene sequence:

>585_bases
GTGAAAAAACAATGGGTATATTTATTGTCGTTTATGGTAATTGCGCTGTTCCTGATGGCTTGCGGTGATGATCAATCAGA
TGAAGAAAATCAGGATAAAGGTGAAGAAGCGGTAGAATCGAATGCAACTGCGGAAGAGGAAGTTTTAGTGTCGCTAGAAA
ATAATGAAGGACAAGTAGTTGGAACAGCTACTTTAACAGAAGGTGAAGAAGGGGTTCAGATTTCATTAGAAGGTGAAAAT
CTTCCAGCAGGAGAACATGGTTTTCATATTCATGAAGCAGGTAAATGTGAATTGCCAAATTTTGAATCAGCAGGATCACA
TTATAATCCGACAAATGCTAAGCACGGGTTCAATCATCCAGAAGGACCTCATGCAGGTGATTTAGAGAACATTACCGTAG
AGGAAGATGGAACAGTTCAGACAGAGGTAGATGCACCAATGGTGACTCTACAGGCTGATACAGAGAATACGTTGTATACT
GAACAAGGAACCTCATTAATAATTCATTCAGGTCCAGATGATTATAAGTCTCAGCCATCTGGTGATGCAGGAGATCGTAT
TGCATGTGGTGTCATAGGAGAGTAA

Upstream 100 bases:

>100_bases
ATATTATACCAAATTTCGCGTTTAAATCTAAGCTAAGTTGTGAATTATAGAAATAGGAAATCATTATATATTCATTTCTT
CAGTGAAAGGAGTAAACATA

Downstream 100 bases:

>100_bases
TATATAGCCTTTAAGATTTCATAATTTTAAAGAGACTAGGATAATGAGTGAACATTCCTAGTCTCTTTTCTTATGGTCTA
GGAAATTATAAAACTTTGGG

Product: Cu-Zn superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MKKQWVYLLSFMVIALFLMACGDDQSDEENQDKGEEAVESNATAEEEVLVSLENNEGQVVGTATLTEGEEGVQISLEGEN
LPAGEHGFHIHEAGKCELPNFESAGSHYNPTNAKHGFNHPEGPHAGDLENITVEEDGTVQTEVDAPMVTLQADTENTLYT
EQGTSLIIHSGPDDYKSQPSGDAGDRIACGVIGE

Sequences:

>Translated_194_residues
MKKQWVYLLSFMVIALFLMACGDDQSDEENQDKGEEAVESNATAEEEVLVSLENNEGQVVGTATLTEGEEGVQISLEGEN
LPAGEHGFHIHEAGKCELPNFESAGSHYNPTNAKHGFNHPEGPHAGDLENITVEEDGTVQTEVDAPMVTLQADTENTLYT
EQGTSLIIHSGPDDYKSQPSGDAGDRIACGVIGE
>Mature_194_residues
MKKQWVYLLSFMVIALFLMACGDDQSDEENQDKGEEAVESNATAEEEVLVSLENNEGQVVGTATLTEGEEGVQISLEGEN
LPAGEHGFHIHEAGKCELPNFESAGSHYNPTNAKHGFNHPEGPHAGDLENITVEEDGTVQTEVDAPMVTLQADTENTLYT
EQGTSLIIHSGPDDYKSQPSGDAGDRIACGVIGE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=152, Percent_Identity=33.5526315789474, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI4826665, Length=122, Percent_Identity=32.7868852459016, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI1787934, Length=163, Percent_Identity=37.4233128834356, Blast_Score=86, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71981876, Length=145, Percent_Identity=37.2413793103448, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71981879, Length=145, Percent_Identity=37.2413793103448, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17554806, Length=142, Percent_Identity=33.8028169014084, Blast_Score=73, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17537871, Length=171, Percent_Identity=32.7485380116959, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322564, Length=120, Percent_Identity=37.5, Blast_Score=69, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007680, Length=195, Percent_Identity=30.2564102564103, Blast_Score=77, Evalue=5e-15,
Organism=Drosophila melanogaster, GI85725006, Length=195, Percent_Identity=30.2564102564103, Blast_Score=77, Evalue=5e-15,
Organism=Drosophila melanogaster, GI45551081, Length=195, Percent_Identity=30.2564102564103, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24652737, Length=195, Percent_Identity=30.2564102564103, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI17136496, Length=148, Percent_Identity=34.4594594594595, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 20817; Mature: 20817

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQWVYLLSFMVIALFLMACGDDQSDEENQDKGEEAVESNATAEEEVLVSLENNEGQVV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEEE
GTATLTEGEEGVQISLEGENLPAGEHGFHIHEAGKCELPNFESAGSHYNPTNAKHGFNHP
EEEEECCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EGPHAGDLENITVEEDGTVQTEVDAPMVTLQADTENTLYTEQGTSLIIHSGPDDYKSQPS
CCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCEEEECCCCEEEEECCCCCCCCCCC
GDAGDRIACGVIGE
CCCCCEEEEEECCC
>Mature Secondary Structure
MKKQWVYLLSFMVIALFLMACGDDQSDEENQDKGEEAVESNATAEEEVLVSLENNEGQVV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEEE
GTATLTEGEEGVQISLEGENLPAGEHGFHIHEAGKCELPNFESAGSHYNPTNAKHGFNHP
EEEEECCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EGPHAGDLENITVEEDGTVQTEVDAPMVTLQADTENTLYTEQGTSLIIHSGPDDYKSQPS
CCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCEEEECCCCEEEEECCCCCCCCCCC
GDAGDRIACGVIGE
CCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]