Click here to switch to the map view.

The map label for this gene is rpmE

Identifier: 23100455

GI number: 23100455

Start: 3108560

End: 3108805

Strand: Reverse

Name: rpmE

Synonym: OB3000

Alternate gene names: 23100455

Gene position: 3108805-3108560 (Counterclockwise)

Preceding gene: 23100456

Following gene: 23100454

Centisome position: 85.63

GC content: 34.96

Gene sequence:

>246_bases
ATGAAAAAGGATATCCATCCAGAGTACAAAAAAGTAGTATTTCTAGATACTAGTACGAATTTCAAATTCTTAAGTGGTTC
TACTAAAGGATCTGACGAAACAATTGAGTGGGAAGATGGAAACACATACCCATTAATTAAAGTGGAAATCAGTTCTGATT
CTCACCCGTTCTACACTGGTAAGCAAAAAGCTGACAAAGTTGGCGGACGTGTGGATCGCTTTAAGAAAAAATATAATCTT
CAATAA

Upstream 100 bases:

>100_bases
TTTCTATGTGAGTTTAGAAAAGGTGTACCCAACCGCCTATGACGACTCTTACAATAACTCTGTTTCCAAGGGATTCAGGG
CAAAAAGGAGCGGAAATACA

Downstream 100 bases:

>100_bases
GAAAGTTGCTCAACGTAAGATTATGTTGAACGCTTCCTAAAAAAGGCAGGCAAAATGTCTAATTTTGCCTGTTTTTTTAC
TTTCATTATTGTTAAAATAA

Product: 50S ribosomal protein L31

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MKKDIHPEYKKVVFLDTSTNFKFLSGSTKGSDETIEWEDGNTYPLIKVEISSDSHPFYTGKQKADKVGGRVDRFKKKYNL
Q

Sequences:

>Translated_81_residues
MKKDIHPEYKKVVFLDTSTNFKFLSGSTKGSDETIEWEDGNTYPLIKVEISSDSHPFYTGKQKADKVGGRVDRFKKKYNL
Q
>Mature_81_residues
MKKDIHPEYKKVVFLDTSTNFKFLSGSTKGSDETIEWEDGNTYPLIKVEISSDSHPFYTGKQKADKVGGRVDRFKKKYNL
Q

Specific function: Unknown

COG id: COG0254

COG function: function code J; Ribosomal protein L31

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L31P family. Type B subfamily

Homologues:

Organism=Escherichia coli, GI2367109, Length=78, Percent_Identity=50, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL31B_OCEIH (Q8EM58)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_693922.1
- ProteinModelPortal:   Q8EM58
- SMR:   Q8EM58
- GeneID:   1017915
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB3000
- NMPDR:   fig|221109.1.peg.3002
- HOGENOM:   HBG610087
- OMA:   QFLTRST
- BioCyc:   OIHE221109:OB3000-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00502
- InterPro:   IPR002150
- PRINTS:   PR01249
- TIGRFAMs:   TIGR00105

Pfam domain/function: PF01197 Ribosomal_L31

EC number: NA

Molecular weight: Translated: 9349; Mature: 9349

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS01143 RIBOSOMAL_L31

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKDIHPEYKKVVFLDTSTNFKFLSGSTKGSDETIEWEDGNTYPLIKVEISSDSHPFYTG
CCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEECCCCCCCEEEEEECCCCCCEECC
KQKADKVGGRVDRFKKKYNLQ
CCCHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKKDIHPEYKKVVFLDTSTNFKFLSGSTKGSDETIEWEDGNTYPLIKVEISSDSHPFYTG
CCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEECCCCCCCEEEEEECCCCCCEECC
KQKADKVGGRVDRFKKKYNLQ
CCCHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376