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The map label for this gene is ydfH [H]

Identifier: 23100302

GI number: 23100302

Start: 2930984

End: 2931643

Strand: Reverse

Name: ydfH [H]

Synonym: OB2847

Alternate gene names: 23100302

Gene position: 2931643-2930984 (Counterclockwise)

Preceding gene: 23100303

Following gene: 23100301

Centisome position: 80.75

GC content: 36.21

Gene sequence:

>660_bases
ATGGATAAAGACATTCAAAAAAAAATCAGTATGCAATCGCGTTCTGTGCGTGATCTTATTTATGATTATTTAAAAGAAGC
GATTATTAATGGGGAATATGAGCCTGGTTTTCATTTGCGAGAAAGAGAGTTGGCAAAAGCCTTTGAAGTGAGCACAACAC
CAATTAAAGAGGCATTTCGATTGCTTAGTAATGAGGGATTAGTTCGTACACTATCAAGAAAAGGAACTTTTGTCTCGGAT
GATATCATGAGTTCAGTCGAAGAGATTGCCCGTGTAAGAGCTGCATTAGAAGGTGTCGCAGCAAGGTTCGCTGCTATAAA
GCGGACAGATGAGGATTTGGTGCAATTAGAAGCTATAATTAATCAGATGAAGAATTCCACGAGTGAGAATAACCGGGAGA
AATTAAACGAATTTAATAGTGAGTTTCATCAATTTATTCGTAAATGTGCGAGAAATGGTTTTATATTTAAACAAGTAGAG
TCTGTTCATTCATATGACCAATATATTCGTAAGAAAGCATTATCGAATATTGAAGAGCATGAGAAAGCATTTAAGGAGCA
TTACCTTATTTATAAAATGATTGTTGAACAAGATGCAGATGGGGCGGAAAAGGTCATGCGAGAGCATATTATTCGTTCAG
CAAAAGTGGCGCTTTATTAA

Upstream 100 bases:

>100_bases
GTAGATAATCTTATGAAAGGATTCACGGGGGAAGTGCCACCAAGCCTGATCAATCCAGACGTTTTAACAGACTAATAATC
GAAAAAGGAGAAAGATGAAT

Downstream 100 bases:

>100_bases
TTTACCTTGAATACGTTTTATTAAAAATTCAGAATAAACTTGACAATGATCCTCTTACTAAATTATAGTTGATATATCAG
ATATCAACTCAATGCTAGGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDKDIQKKISMQSRSVRDLIYDYLKEAIINGEYEPGFHLRERELAKAFEVSTTPIKEAFRLLSNEGLVRTLSRKGTFVSD
DIMSSVEEIARVRAALEGVAARFAAIKRTDEDLVQLEAIINQMKNSTSENNREKLNEFNSEFHQFIRKCARNGFIFKQVE
SVHSYDQYIRKKALSNIEEHEKAFKEHYLIYKMIVEQDADGAEKVMREHIIRSAKVALY

Sequences:

>Translated_219_residues
MDKDIQKKISMQSRSVRDLIYDYLKEAIINGEYEPGFHLRERELAKAFEVSTTPIKEAFRLLSNEGLVRTLSRKGTFVSD
DIMSSVEEIARVRAALEGVAARFAAIKRTDEDLVQLEAIINQMKNSTSENNREKLNEFNSEFHQFIRKCARNGFIFKQVE
SVHSYDQYIRKKALSNIEEHEKAFKEHYLIYKMIVEQDADGAEKVMREHIIRSAKVALY
>Mature_219_residues
MDKDIQKKISMQSRSVRDLIYDYLKEAIINGEYEPGFHLRERELAKAFEVSTTPIKEAFRLLSNEGLVRTLSRKGTFVSD
DIMSSVEEIARVRAALEGVAARFAAIKRTDEDLVQLEAIINQMKNSTSENNREKLNEFNSEFHQFIRKCARNGFIFKQVE
SVHSYDQYIRKKALSNIEEHEKAFKEHYLIYKMIVEQDADGAEKVMREHIIRSAKVALY

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=198, Percent_Identity=25.7575757575758, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI48994955, Length=219, Percent_Identity=26.4840182648402, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25486; Mature: 25486

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKDIQKKISMQSRSVRDLIYDYLKEAIINGEYEPGFHLRERELAKAFEVSTTPIKEAFR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH
LLSNEGLVRTLSRKGTFVSDDIMSSVEEIARVRAALEGVAARFAAIKRTDEDLVQLEAII
HHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NQMKNSTSENNREKLNEFNSEFHQFIRKCARNGFIFKQVESVHSYDQYIRKKALSNIEEH
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EKAFKEHYLIYKMIVEQDADGAEKVMREHIIRSAKVALY
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKDIQKKISMQSRSVRDLIYDYLKEAIINGEYEPGFHLRERELAKAFEVSTTPIKEAFR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH
LLSNEGLVRTLSRKGTFVSDDIMSSVEEIARVRAALEGVAARFAAIKRTDEDLVQLEAII
HHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NQMKNSTSENNREKLNEFNSEFHQFIRKCARNGFIFKQVESVHSYDQYIRKKALSNIEEH
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EKAFKEHYLIYKMIVEQDADGAEKVMREHIIRSAKVALY
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]