Click here to switch to the map view.

The map label for this gene is liaH [H]

Identifier: 23100280

GI number: 23100280

Start: 2904476

End: 2905114

Strand: Reverse

Name: liaH [H]

Synonym: OB2825

Alternate gene names: 23100280

Gene position: 2905114-2904476 (Counterclockwise)

Preceding gene: 23100281

Following gene: 23100279

Centisome position: 80.02

GC content: 37.4

Gene sequence:

>639_bases
ATGGCAACGAATATTTTCACACGAATTAAAGACTCAGTATCTGCGGATCTTCACACGATGATGGATAAAAAGGAACAAAA
GAATCCAATTGCGGCATTAAACCATTACTTACGTCAAAGCGAGCAGGAAAAGGAAAAAGTAAGAAAGCTTATTGACCGTC
AGTACAAGTTAAAGGAAGAGTTCACACGCGAATATATGAAAGCACAAGACCTTGCAGATAAACGATTAAATCAGGCAAAA
ATTGCTGACCGTGCGCAGGAAGAAGAAATGCATGAATTTGCTTTAAAAGAATATGAAGAATACCAATCTCGTGCAGATCG
CATGAAAGCTTCTAGAGAAGAAGCGATGAAACAATTAGAAGATTTAGAGCAAAAATATGAAGAGATGAAGCATCGCTTAA
AAGATATGCATCTTCGGAGAATGGAGCTAATGGGGCGTGAGAACATTGCAAAAGCGAATCATCAGATTAACCGCGTCGTT
ACCGATTCAGCTGAAAAGCCTTACTCCAAATTTGAAGAAATGGAACAATATATTGAAAATCTAGAGTATAGAGTAAATAG
CTCCTACTATCAGAGTACGTTCGATAGCAAAATTGCAGCGCTTGAGAAGAAATTAGAAGAGAAAGAAAATGAAGCTTAA

Upstream 100 bases:

>100_bases
TCCATGAAGTAAAAGAAGACAATGATCCTTTTACCAACTTTGAAAGACAGTGGGCAGAATTAAATAAATAAAAAAATTAT
ACTAAAAGGAGAGATTTTTT

Downstream 100 bases:

>100_bases
TAAACTCGGTAGGTAGATAAGCAACTCTCATGGTATACTAATACAGGCGTATTATCTTTGCGTCTGTATTAGTTACATAC
ATAATGAAACAAAAGAAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MATNIFTRIKDSVSADLHTMMDKKEQKNPIAALNHYLRQSEQEKEKVRKLIDRQYKLKEEFTREYMKAQDLADKRLNQAK
IADRAQEEEMHEFALKEYEEYQSRADRMKASREEAMKQLEDLEQKYEEMKHRLKDMHLRRMELMGRENIAKANHQINRVV
TDSAEKPYSKFEEMEQYIENLEYRVNSSYYQSTFDSKIAALEKKLEEKENEA

Sequences:

>Translated_212_residues
MATNIFTRIKDSVSADLHTMMDKKEQKNPIAALNHYLRQSEQEKEKVRKLIDRQYKLKEEFTREYMKAQDLADKRLNQAK
IADRAQEEEMHEFALKEYEEYQSRADRMKASREEAMKQLEDLEQKYEEMKHRLKDMHLRRMELMGRENIAKANHQINRVV
TDSAEKPYSKFEEMEQYIENLEYRVNSSYYQSTFDSKIAALEKKLEEKENEA
>Mature_211_residues
ATNIFTRIKDSVSADLHTMMDKKEQKNPIAALNHYLRQSEQEKEKVRKLIDRQYKLKEEFTREYMKAQDLADKRLNQAKI
ADRAQEEEMHEFALKEYEEYQSRADRMKASREEAMKQLEDLEQKYEEMKHRLKDMHLRRMELMGRENIAKANHQINRVVT
DSAEKPYSKFEEMEQYIENLEYRVNSSYYQSTFDSKIAALEKKLEEKENEA

Specific function: Unknown

COG id: COG1842

COG function: function code KT; Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspA/IM30 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007157 [H]

Pfam domain/function: PF04012 PspA_IM30 [H]

EC number: NA

Molecular weight: Translated: 25589; Mature: 25458

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNIFTRIKDSVSADLHTMMDKKEQKNPIAALNHYLRQSEQEKEKVRKLIDRQYKLKEE
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTREYMKAQDLADKRLNQAKIADRAQEEEMHEFALKEYEEYQSRADRMKASREEAMKQLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLEQKYEEMKHRLKDMHLRRMELMGRENIAKANHQINRVVTDSAEKPYSKFEEMEQYIEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LEYRVNSSYYQSTFDSKIAALEKKLEEKENEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATNIFTRIKDSVSADLHTMMDKKEQKNPIAALNHYLRQSEQEKEKVRKLIDRQYKLKEE
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTREYMKAQDLADKRLNQAKIADRAQEEEMHEFALKEYEEYQSRADRMKASREEAMKQLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLEQKYEEMKHRLKDMHLRRMELMGRENIAKANHQINRVVTDSAEKPYSKFEEMEQYIEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LEYRVNSSYYQSTFDSKIAALEKKLEEKENEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377; 12207695 [H]