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The map label for this gene is araA [H]

Identifier: 23100252

GI number: 23100252

Start: 2876495

End: 2877979

Strand: Reverse

Name: araA [H]

Synonym: OB2797

Alternate gene names: 23100252

Gene position: 2877979-2876495 (Counterclockwise)

Preceding gene: 23100253

Following gene: 23100251

Centisome position: 79.27

GC content: 38.86

Gene sequence:

>1485_bases
ATGCTTATTACGGACAAAAATAATACAGCGAAACTATTAAACTATGAAATGAGGATGAATATGCTTACATTAAAAGAAAA
AGAATTTTGGTTTGTTGTCGGTTCTCAACAATTATACGGAGAAGAAGCGTTACAAGAAGTGAAAGCACAGGCACAAACAG
TTACAGATGCGTTAAATGAAAGTGGTGCACTACCGTATCCAATTGTGTTGAAAGATTTAGCAATTAATGCCGACCAAATC
ACAAACGTGATGAAAGAAGTGAACTACCGAGATGAGGTTGCAGGTGTTATTACATGGATGCACACATTCTCACCTGCAAA
AATGTGGATTCGTGGAACGAAACTATTACAAAAACCATTACTGCATTTAGCAACGCAATTTAATGAAAGTATTCCTTGGG
ATACCATTGATATGGATTTCATGAATCTAAACCAATCTGCTCATGGGGATCGTGAGTACGGTTTTATCAATGCGAGATTA
AATAAACAAAATAAAGTTGTAGTCGGTTATTGGGGTAAATCTGAAGTGCAACGCCAAATTGCAGAATGGATGGATGTAGC
AGCAGCATATAACGAAAGCTTTAACGTTAAAGTTGCTCGATTCGGTGATAATATGCGTAATGTTGCGGTTACCGATGGAG
ATAAAATTGAAGCGCAAATTCAATTTGGTTGGACAGTCGACTACTTTGCAATTGGCGATTTAGTTCAATATGTCAATGCT
GTGAAAGAAGAAGAAATTGATGTCTTATTTGCAGAGTACAAAGATAGCTATGACTTTGATTATGGAGATTACAGTAAAGA
CGATTGGGAAGCAAGTGTCAGAGTTCAAGCAAGTTATGAGATTGCGATTAAACGCTTTCTTGATGACGGTGGTTACAATG
CTTTCACATCGAACTTTGAAGATTTATATGGGATGAAACAACTTCCTGGTTTAGCGGTTCAACGTTTAATGGGACAAGGT
TATGGATTTGCAGGTGAAGGCGATTGGAAAACGGCAGCCCTTGATCGTTTACTAAAAGTGATGAGTCATAACCAATCCAC
AGGCTTTATGGAAGATTACACATATGAATTAGCCGAGGGGAAAGAGGCTATTCTTCAATCCCATATGCTTGAGGTAGACC
CGACTTTAGCATCTACTAAACCGAAAATTACTGTTTTCCCTCTGGGTATAGGTGATCGTGAAGATCCTGCCAGACTAGTA
TTCGATGGCAAAGCTGGAGATGGTGTCGTTGTCTCTATGGCAGACTTTGGAACGCATTTTAAACTTCTTATAAATGAAGT
TAATGCATTTGAGCCAACAACTCCTGCACCTAACTTGCCAGTAGCTCGTGTACTTTGGGAAGTGAAGCCTAATTTCCAAG
ATGGTGTGAAGGCTTGGATAGAAAACGGTGGAGGCCACCACACAGTTGTTTCCTTGAATTTAACGACAGATCAAGTGGTA
TCGTATGCCAAACTTGTAGGATTGGATTATATCGTAATTAAGTAA

Upstream 100 bases:

>100_bases
GTGGCAAAAATGAATTTATTTGCTCGAGAATTAAACCGATTTGCACCGGAATTACCGGATCGGATCTTAGATAAACATTA
TTTACGTAAGCATGGTGGAG

Downstream 100 bases:

>100_bases
GGATAAACATCCAAGGAAGTACTCCTTCCTTGGATGAAATTAAGTAATTTGATAGTGGAAATAAATGTAACTTAAATAGT
AGAAAAAACCCATGTATTAT

Product: L-arabinose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MLITDKNNTAKLLNYEMRMNMLTLKEKEFWFVVGSQQLYGEEALQEVKAQAQTVTDALNESGALPYPIVLKDLAINADQI
TNVMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQFNESIPWDTIDMDFMNLNQSAHGDREYGFINARL
NKQNKVVVGYWGKSEVQRQIAEWMDVAAAYNESFNVKVARFGDNMRNVAVTDGDKIEAQIQFGWTVDYFAIGDLVQYVNA
VKEEEIDVLFAEYKDSYDFDYGDYSKDDWEASVRVQASYEIAIKRFLDDGGYNAFTSNFEDLYGMKQLPGLAVQRLMGQG
YGFAGEGDWKTAALDRLLKVMSHNQSTGFMEDYTYELAEGKEAILQSHMLEVDPTLASTKPKITVFPLGIGDREDPARLV
FDGKAGDGVVVSMADFGTHFKLLINEVNAFEPTTPAPNLPVARVLWEVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQVV
SYAKLVGLDYIVIK

Sequences:

>Translated_494_residues
MLITDKNNTAKLLNYEMRMNMLTLKEKEFWFVVGSQQLYGEEALQEVKAQAQTVTDALNESGALPYPIVLKDLAINADQI
TNVMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQFNESIPWDTIDMDFMNLNQSAHGDREYGFINARL
NKQNKVVVGYWGKSEVQRQIAEWMDVAAAYNESFNVKVARFGDNMRNVAVTDGDKIEAQIQFGWTVDYFAIGDLVQYVNA
VKEEEIDVLFAEYKDSYDFDYGDYSKDDWEASVRVQASYEIAIKRFLDDGGYNAFTSNFEDLYGMKQLPGLAVQRLMGQG
YGFAGEGDWKTAALDRLLKVMSHNQSTGFMEDYTYELAEGKEAILQSHMLEVDPTLASTKPKITVFPLGIGDREDPARLV
FDGKAGDGVVVSMADFGTHFKLLINEVNAFEPTTPAPNLPVARVLWEVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQVV
SYAKLVGLDYIVIK
>Mature_494_residues
MLITDKNNTAKLLNYEMRMNMLTLKEKEFWFVVGSQQLYGEEALQEVKAQAQTVTDALNESGALPYPIVLKDLAINADQI
TNVMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQFNESIPWDTIDMDFMNLNQSAHGDREYGFINARL
NKQNKVVVGYWGKSEVQRQIAEWMDVAAAYNESFNVKVARFGDNMRNVAVTDGDKIEAQIQFGWTVDYFAIGDLVQYVNA
VKEEEIDVLFAEYKDSYDFDYGDYSKDDWEASVRVQASYEIAIKRFLDDGGYNAFTSNFEDLYGMKQLPGLAVQRLMGQG
YGFAGEGDWKTAALDRLLKVMSHNQSTGFMEDYTYELAEGKEAILQSHMLEVDPTLASTKPKITVFPLGIGDREDPARLV
FDGKAGDGVVVSMADFGTHFKLLINEVNAFEPTTPAPNLPVARVLWEVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQVV
SYAKLVGLDYIVIK

Specific function: Catalyzes the conversion of L-arabinose to L-ribulose [H]

COG id: COG2160

COG function: function code G; L-arabinose isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the arabinose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1786248, Length=476, Percent_Identity=48.7394957983193, Blast_Score=492, Evalue=1e-140,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004216
- InterPro:   IPR009015
- InterPro:   IPR003762
- ProDom:   PD018364 [H]

Pfam domain/function: PF02610 Arabinose_Isome [H]

EC number: =5.3.1.4 [H]

Molecular weight: Translated: 55680; Mature: 55680

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLITDKNNTAKLLNYEMRMNMLTLKEKEFWFVVGSQQLYGEEALQEVKAQAQTVTDALNE
CEEECCCCCHHEEEHHHHHCEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
SGALPYPIVLKDLAINADQITNVMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPL
CCCCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LHLATQFNESIPWDTIDMDFMNLNQSAHGDREYGFINARLNKQNKVVVGYWGKSEVQRQI
HHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEECCHHHHHHHH
AEWMDVAAAYNESFNVKVARFGDNMRNVAVTDGDKIEAQIQFGWTVDYFAIGDLVQYVNA
HHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCEEEEEEEECCEEHHHHHHHHHHHHHH
VKEEEIDVLFAEYKDSYDFDYGDYSKDDWEASVRVQASYEIAIKRFLDDGGYNAFTSNFE
HHHHHHHEEEEECCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCHHHCCHH
DLYGMKQLPGLAVQRLMGQGYGFAGEGDWKTAALDRLLKVMSHNQSTGFMEDYTYELAEG
HHCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
KEAILQSHMLEVDPTLASTKPKITVFPLGIGDREDPARLVFDGKAGDGVVVSMADFGTHF
HHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEHHCCCHH
KLLINEVNAFEPTTPAPNLPVARVLWEVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQVV
HHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHH
SYAKLVGLDYIVIK
HHHHHHCCEEEEEC
>Mature Secondary Structure
MLITDKNNTAKLLNYEMRMNMLTLKEKEFWFVVGSQQLYGEEALQEVKAQAQTVTDALNE
CEEECCCCCHHEEEHHHHHCEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
SGALPYPIVLKDLAINADQITNVMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPL
CCCCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LHLATQFNESIPWDTIDMDFMNLNQSAHGDREYGFINARLNKQNKVVVGYWGKSEVQRQI
HHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEECCHHHHHHHH
AEWMDVAAAYNESFNVKVARFGDNMRNVAVTDGDKIEAQIQFGWTVDYFAIGDLVQYVNA
HHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCEEEEEEEECCEEHHHHHHHHHHHHHH
VKEEEIDVLFAEYKDSYDFDYGDYSKDDWEASVRVQASYEIAIKRFLDDGGYNAFTSNFE
HHHHHHHEEEEECCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCHHHCCHH
DLYGMKQLPGLAVQRLMGQGYGFAGEGDWKTAALDRLLKVMSHNQSTGFMEDYTYELAEG
HHCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
KEAILQSHMLEVDPTLASTKPKITVFPLGIGDREDPARLVFDGKAGDGVVVSMADFGTHF
HHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEHHCCCHH
KLLINEVNAFEPTTPAPNLPVARVLWEVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQVV
HHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHH
SYAKLVGLDYIVIK
HHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]