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The map label for this gene is yrvN [H]

Identifier: 23099472

GI number: 23099472

Start: 2041605

End: 2042882

Strand: Direct

Name: yrvN [H]

Synonym: OB2017

Alternate gene names: 23099472

Gene position: 2041605-2042882 (Clockwise)

Preceding gene: 23099454

Following gene: 23099473

Centisome position: 56.23

GC content: 37.64

Gene sequence:

>1278_bases
ATGAATCACCATCAACCGCTCGCATATCGTATGCGCCCGAAAAATATAGATGAAATTATAGGACAAGAACACCTTGTTGG
TCAAGGGAAAATAATTGATAGAATGGTAAAGGCTAACATGCTATCATCCATGATTCTTTTTGGCCCACCAGGAACAGGAA
AAACTTCTATGGCTTACGCTTTAGCAAATAGTGTAGGTCTACCTTTAAAGATATTAAACGCGGTAACGGATAAAAAGAAA
GATATGGAAATAGTTGTAGAAGAAGCAAAAATGAGAGGGCAAATGGTTCTTATACTTGATGAAGTTCATCGACTAGATAA
AGCAAAACAAGATTTTCTGCTTCCTCATCTAGAAAGTAACTTACTAACCTTGATTGGTTGTACAACGAGTAATCCATATC
ACTCTATTAATCCGGCAATACGTAGTCGCTGTCATTTATTTGAATTGCACGGGTTAACAATCGACAATGTAAAAACCGCG
TTACATCGTGCAATAGTACAATATAATGAAACATCTCAAAATGATATTAATATTGGGGAAGATGCACTTGAACACTTAGC
TTTAGCAGCAAATGGAGATTTACGGTCATCTTTAAACGGATTAGAATTAGCGGTAAGTTCGACTCCACCGACGGAAACTG
GTGTAATTGAACTCACAATAGATATTGCTGAAGAATGTATGCAAAAAAAATCCTTTTCACATGATAAAGATGGTGATGCT
CATTATGATGTTTTATCCGCTTTTCAAAAATCAATCCGCGGTAGTGATGTAGATGCCGCACTTCATTATTTAAGTCGATT
AATTGAGGCAGGAGACCTCGATAGTATTGCAAGACGTATGATCGTAATTGCATATGAAGATATCGGGCTTGCTAATCCTC
AAGCTGGACCAAGAGCAGTATCTGCTGTACAGGCTGCAGAACGATTAGGTTTTCCCGAAGCTCGAATCCCCCTTGCAAAC
GTCGTTGTAGAACTTGCACTATCTCCAAAGTCAAACACAGCCTATAAAGCTTTAGATGCGGCCTTAAGTGATTTACGATC
TGGTAGAAGTGGTGATGTCCCTGCTCACCTAAAAGATTCTCATTATAAGGGAGCAGAAAAATTAGGAAGAGGAAAAGAGT
ATTTATATCCTCATAATTATCCTGGTGCTTGGGTAGACCAACAATATCTCCCTGATTCTATCAAAAACCGAATCTATTAT
TCACCAAAAGATACAGGGAAATTCGAAAAAGCTCTCAAACAAGTTTATGAAAAAATTCAACGAGATAGAAAGAATTAA

Upstream 100 bases:

>100_bases
ATTCTACATGTTATTATATCATGACAACCATCCTCTTGCATTTCACTAGAATCCACTATAAGCTTGAAGGATAAAACTGA
AATAAAAAGGACGATTTGTT

Downstream 100 bases:

>100_bases
CGTATATTTCCCCCTCTTTGCGGTAACAATAGAAACTACTATACACAATTTCTATTGATTTCTAAATAAGAGGAGTGAAT
ATTCAATGGCAAAAGTAGAC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MNHHQPLAYRMRPKNIDEIIGQEHLVGQGKIIDRMVKANMLSSMILFGPPGTGKTSMAYALANSVGLPLKILNAVTDKKK
DMEIVVEEAKMRGQMVLILDEVHRLDKAKQDFLLPHLESNLLTLIGCTTSNPYHSINPAIRSRCHLFELHGLTIDNVKTA
LHRAIVQYNETSQNDINIGEDALEHLALAANGDLRSSLNGLELAVSSTPPTETGVIELTIDIAEECMQKKSFSHDKDGDA
HYDVLSAFQKSIRGSDVDAALHYLSRLIEAGDLDSIARRMIVIAYEDIGLANPQAGPRAVSAVQAAERLGFPEARIPLAN
VVVELALSPKSNTAYKALDAALSDLRSGRSGDVPAHLKDSHYKGAEKLGRGKEYLYPHNYPGAWVDQQYLPDSIKNRIYY
SPKDTGKFEKALKQVYEKIQRDRKN

Sequences:

>Translated_425_residues
MNHHQPLAYRMRPKNIDEIIGQEHLVGQGKIIDRMVKANMLSSMILFGPPGTGKTSMAYALANSVGLPLKILNAVTDKKK
DMEIVVEEAKMRGQMVLILDEVHRLDKAKQDFLLPHLESNLLTLIGCTTSNPYHSINPAIRSRCHLFELHGLTIDNVKTA
LHRAIVQYNETSQNDINIGEDALEHLALAANGDLRSSLNGLELAVSSTPPTETGVIELTIDIAEECMQKKSFSHDKDGDA
HYDVLSAFQKSIRGSDVDAALHYLSRLIEAGDLDSIARRMIVIAYEDIGLANPQAGPRAVSAVQAAERLGFPEARIPLAN
VVVELALSPKSNTAYKALDAALSDLRSGRSGDVPAHLKDSHYKGAEKLGRGKEYLYPHNYPGAWVDQQYLPDSIKNRIYY
SPKDTGKFEKALKQVYEKIQRDRKN
>Mature_425_residues
MNHHQPLAYRMRPKNIDEIIGQEHLVGQGKIIDRMVKANMLSSMILFGPPGTGKTSMAYALANSVGLPLKILNAVTDKKK
DMEIVVEEAKMRGQMVLILDEVHRLDKAKQDFLLPHLESNLLTLIGCTTSNPYHSINPAIRSRCHLFELHGLTIDNVKTA
LHRAIVQYNETSQNDINIGEDALEHLALAANGDLRSSLNGLELAVSSTPPTETGVIELTIDIAEECMQKKSFSHDKDGDA
HYDVLSAFQKSIRGSDVDAALHYLSRLIEAGDLDSIARRMIVIAYEDIGLANPQAGPRAVSAVQAAERLGFPEARIPLAN
VVVELALSPKSNTAYKALDAALSDLRSGRSGDVPAHLKDSHYKGAEKLGRGKEYLYPHNYPGAWVDQQYLPDSIKNRIYY
SPKDTGKFEKALKQVYEKIQRDRKN

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=444, Percent_Identity=34.2342342342342, Blast_Score=243, Evalue=3e-64,
Organism=Homo sapiens, GI18426904, Length=444, Percent_Identity=31.3063063063063, Blast_Score=201, Evalue=8e-52,
Organism=Homo sapiens, GI4506491, Length=223, Percent_Identity=25.1121076233184, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI31881687, Length=223, Percent_Identity=25.1121076233184, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI6677723, Length=210, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI194306571, Length=206, Percent_Identity=26.6990291262136, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI194306567, Length=206, Percent_Identity=26.6990291262136, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI31563534, Length=220, Percent_Identity=28.6363636363636, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1787119, Length=412, Percent_Identity=37.621359223301, Blast_Score=275, Evalue=5e-75,
Organism=Escherichia coli, GI1788167, Length=118, Percent_Identity=31.3559322033898, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71986063, Length=219, Percent_Identity=26.9406392694064, Blast_Score=72, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6324111, Length=424, Percent_Identity=36.3207547169811, Blast_Score=244, Evalue=2e-65,
Organism=Saccharomyces cerevisiae, GI6324039, Length=263, Percent_Identity=28.1368821292776, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322528, Length=291, Percent_Identity=24.3986254295533, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19921076, Length=223, Percent_Identity=26.9058295964126, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI18859927, Length=216, Percent_Identity=25, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 47034; Mature: 47034

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHHQPLAYRMRPKNIDEIIGQEHLVGQGKIIDRMVKANMLSSMILFGPPGTGKTSMAYA
CCCCCCCEEEECCCCHHHHHCCHHCCCCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHH
LANSVGLPLKILNAVTDKKKDMEIVVEEAKMRGQMVLILDEVHRLDKAKQDFLLPHLESN
HHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCHHHCCC
LLTLIGCTTSNPYHSINPAIRSRCHLFELHGLTIDNVKTALHRAIVQYNETSQNDINIGE
EEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
DALEHLALAANGDLRSSLNGLELAVSSTPPTETGVIELTIDIAEECMQKKSFSHDKDGDA
HHHHHHHHHCCCCHHHCCCCEEEEECCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCH
HYDVLSAFQKSIRGSDVDAALHYLSRLIEAGDLDSIARRMIVIAYEDIGLANPQAGPRAV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHEEEEEEECCCCCCCCCCHHHH
SAVQAAERLGFPEARIPLANVVVELALSPKSNTAYKALDAALSDLRSGRSGDVPAHLKDS
HHHHHHHHCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
HYKGAEKLGRGKEYLYPHNYPGAWVDQQYLPDSIKNRIYYSPKDTGKFEKALKQVYEKIQ
CCCCHHHHCCCCCCCCCCCCCCCCCCHHCCCHHHHCCEEECCCCCCHHHHHHHHHHHHHH
RDRKN
HHCCC
>Mature Secondary Structure
MNHHQPLAYRMRPKNIDEIIGQEHLVGQGKIIDRMVKANMLSSMILFGPPGTGKTSMAYA
CCCCCCCEEEECCCCHHHHHCCHHCCCCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHH
LANSVGLPLKILNAVTDKKKDMEIVVEEAKMRGQMVLILDEVHRLDKAKQDFLLPHLESN
HHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCHHHCCC
LLTLIGCTTSNPYHSINPAIRSRCHLFELHGLTIDNVKTALHRAIVQYNETSQNDINIGE
EEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
DALEHLALAANGDLRSSLNGLELAVSSTPPTETGVIELTIDIAEECMQKKSFSHDKDGDA
HHHHHHHHHCCCCHHHCCCCEEEEECCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCH
HYDVLSAFQKSIRGSDVDAALHYLSRLIEAGDLDSIARRMIVIAYEDIGLANPQAGPRAV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHEEEEEEECCCCCCCCCCHHHH
SAVQAAERLGFPEARIPLANVVVELALSPKSNTAYKALDAALSDLRSGRSGDVPAHLKDS
HHHHHHHHCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
HYKGAEKLGRGKEYLYPHNYPGAWVDQQYLPDSIKNRIYYSPKDTGKFEKALKQVYEKIQ
CCCCHHHHCCCCCCCCCCCCCCCCCCHHCCCHHHHCCEEECCCCCCHHHHHHHHHHHHHH
RDRKN
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]