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The map label for this gene is ykfC [H]

Identifier: 23099259

GI number: 23099259

Start: 1839133

End: 1840389

Strand: Reverse

Name: ykfC [H]

Synonym: OB1804

Alternate gene names: 23099259

Gene position: 1840389-1839133 (Counterclockwise)

Preceding gene: 23099260

Following gene: 23099258

Centisome position: 50.69

GC content: 42.32

Gene sequence:

>1257_bases
TTGATGAACCAAATTCTGTCACGGGACAATCTCATTCTCGCACTAAAGCGAGTCGAACGAAATAAAGGAAGTCATGGCAT
AGATGAAATGTCCGTAAAATTCCTACGAAGACATCTCTATGATAACTGGGATTCCCTTCGGGAGAACTTGAGGAAAGGAA
CCTATACACCTTCTCCTGTCCGCCGTGTCGAAATCCCGAAACCAAGCGGAGGAGTTCGGATGTTAGGTATTCCAACCGTG
ACGGATCGTTTCATTCAACAGGCTATTGCCCAAGTGCTTCATACAATTTTTGACCCCACCTTCTCAGAACATAGCTATGG
ATTCAGGCCCAACCGTCAAGGACATGACGCTGTGAGGAAGGCAAGGGGGTTTATTAAAGAAGGATACAGATGGGTAATTG
ATATGGACCTAGAGAAATTCTTTGATAAGGTGAACCATGATAAGCTCATGGGTGTTTTAGCGAAGCGCATCAAGGATAAG
GAACTGCTTCGGCTTATTCGGAAATACCTACAATCTGGCGTCATGATAAATGGGATAGTAGTTAGCTCCGAAGAAGGCAC
TCCGCAAGGCGGGCCGTTGAGCCCTCTTCTTTCTAACATTATATTAGATGATTTAGATAAGGAGCTGGAGGAGCGTGGGC
TACGTTTCGTTCGTTATGCGGATGACTGCAACATCTATGTGAGAACAAAGAAAGCTGGGAATCGTGTAATGAATTCCATT
ACTACATTTATCGAAGAGAAACTTCACTTGAAAGTAAATAAAGAGAAATCAGCAGTGGACCGGCCTTGGAAACGTAAGTT
TCTTGGTTTTAGTTTCACCAATGGAAAGAATTCAAAAATTAGAATCGCAAAAGAAAGTATTATGCGTCTAAAACAGAAAA
TCAGGGAAATAACTTCACGTTCCAAGCCATTTCCTATGGAAGTAAGAATTGAGAAATTAAACAAATACCTGATGGGTTGG
TGCGGGTATTACGCTTTAGCGGAGACACCTTCAAAGTTTGAGGAGTTCGATAAGTGGATAAGAAGAAGATTGCGCATGTG
TATGTGGAAACAATGGAAGCTTCCACGGACAAAAGTCCGAAAGCTGATTAGCTTGGGTGTTCCTGACCACAAAGCATACG
AATGGGGAAACACCAGAAAGAATTATTGGCGTATCTCCAAGAGTCCAATCTTAAGCAGAACCCTAGGCAACTCCTATTGG
AGTAGACTAGGGCTCAAAAGTCTGTATCAAAGGTATGAATTTATTCGTAATACTTAA

Upstream 100 bases:

>100_bases
CAAAGGAGGACGTAGTGAATCTACAGGGGACTTTGGAAGGGTGGAGTGGAACTTGCACAAATAGAACGTCACATTCACGA
AGAAAGGAAACCCAAGTATG

Downstream 100 bases:

>100_bases
TTGAACCGCCGTATACCGAACGGTACGTACGGTGGTGTGAGAGGACGGGGGTTAGTCGCTCCCTTCTACTCTATTATTTA
TCATTTATAAAAATATCTTC

Product: recombinase for Bh.Int

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLRRHLYDNWDSLRENLRKGTYTPSPVRRVEIPKPSGGVRMLGIPTV
TDRFIQQAIAQVLHTIFDPTFSEHSYGFRPNRQGHDAVRKARGFIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKDK
ELLRLIRKYLQSGVMINGIVVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNSI
TTFIEEKLHLKVNKEKSAVDRPWKRKFLGFSFTNGKNSKIRIAKESIMRLKQKIREITSRSKPFPMEVRIEKLNKYLMGW
CGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVRKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSYW
SRLGLKSLYQRYEFIRNT

Sequences:

>Translated_418_residues
MMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLRRHLYDNWDSLRENLRKGTYTPSPVRRVEIPKPSGGVRMLGIPTV
TDRFIQQAIAQVLHTIFDPTFSEHSYGFRPNRQGHDAVRKARGFIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKDK
ELLRLIRKYLQSGVMINGIVVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNSI
TTFIEEKLHLKVNKEKSAVDRPWKRKFLGFSFTNGKNSKIRIAKESIMRLKQKIREITSRSKPFPMEVRIEKLNKYLMGW
CGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVRKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSYW
SRLGLKSLYQRYEFIRNT
>Mature_418_residues
MMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLRRHLYDNWDSLRENLRKGTYTPSPVRRVEIPKPSGGVRMLGIPTV
TDRFIQQAIAQVLHTIFDPTFSEHSYGFRPNRQGHDAVRKARGFIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKDK
ELLRLIRKYLQSGVMINGIVVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNSI
TTFIEEKLHLKVNKEKSAVDRPWKRKFLGFSFTNGKNSKIRIAKESIMRLKQKIREITSRSKPFPMEVRIEKLNKYLMGW
CGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVRKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSYW
SRLGLKSLYQRYEFIRNT

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=379, Percent_Identity=28.7598944591029, Blast_Score=131, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6226520, Length=211, Percent_Identity=33.175355450237, Blast_Score=117, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 49324; Mature: 49324

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLRRHLYDNWDSLRENLRKGTYTPSPV
CCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
RRVEIPKPSGGVRMLGIPTVTDRFIQQAIAQVLHTIFDPTFSEHSYGFRPNRQGHDAVRK
CEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
ARGFIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKDKELLRLIRKYLQSGVMINGIV
HHHHHHCCCEEEEECCHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEE
VSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNSI
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHH
TTFIEEKLHLKVNKEKSAVDRPWKRKFLGFSFTNGKNSKIRIAKESIMRLKQKIREITSR
HHHHHHHHHEEECCCHHHHCCCHHHHHCCCEECCCCCCEEEHHHHHHHHHHHHHHHHHHC
SKPFPMEVRIEKLNKYLMGWCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVR
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
KLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSYWSRLGLKSLYQRYEFIRNT
HHHHCCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLRRHLYDNWDSLRENLRKGTYTPSPV
CCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
RRVEIPKPSGGVRMLGIPTVTDRFIQQAIAQVLHTIFDPTFSEHSYGFRPNRQGHDAVRK
CEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
ARGFIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKDKELLRLIRKYLQSGVMINGIV
HHHHHHCCCEEEEECCHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEE
VSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNSI
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHH
TTFIEEKLHLKVNKEKSAVDRPWKRKFLGFSFTNGKNSKIRIAKESIMRLKQKIREITSR
HHHHHHHHHEEECCCHHHHCCCHHHHHCCCEECCCCCCEEEHHHHHHHHHHHHHHHHHHC
SKPFPMEVRIEKLNKYLMGWCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVR
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
KLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSYWSRLGLKSLYQRYEFIRNT
HHHHCCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]