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The map label for this gene is traP

Identifier: 23099246

GI number: 23099246

Start: 1827579

End: 1827803

Strand: Reverse

Name: traP

Synonym: OB1791

Alternate gene names: 23099246

Gene position: 1827803-1827579 (Counterclockwise)

Preceding gene: 23099247

Following gene: 23099245

Centisome position: 50.35

GC content: 34.67

Gene sequence:

>225_bases
ATGACAGACCGCACGGATAAAGCTGAATATTTTATCATAAAAGCTCTTGAGAATGGAGTAAATGTTATGGGGTTAACAAG
AGGACATGATACTCGTTTTCATCATACAGAAAAACTTGACCAAGGCGAAGTTATGATTGCTCAATTTACGGAACATACAT
CAGCGATTAAAGTAAGAGGTAAAGCATTAATTCAAACCAGTCATGGTGAAATAACAAATGAATAA

Upstream 100 bases:

>100_bases
ATTTTACATAGGGCGGCTACAAAGGGGTACGTTTTTAGCGTACCCCTTTTCTTTATATTCATGAATGATTTATTTAAAAA
GTTGCTAAAGGAGATTTACA

Downstream 100 bases:

>100_bases
ATACTAATTATTGGAATTTAGAAGCTACATATATTCAATCGTTTTTATAAATGTAGAAATGTGCTATAATAGCTAAAGCA
ATTGAATGGCTGAAAGGGTC

Product: transcription attenuation protein MtrB

Products: NA

Alternate protein names: Trp RNA-binding attenuation protein; TRAP; Tryptophan RNA-binding attenuator protein

Number of amino acids: Translated: 74; Mature: 73

Protein sequence:

>74_residues
MTDRTDKAEYFIIKALENGVNVMGLTRGHDTRFHHTEKLDQGEVMIAQFTEHTSAIKVRGKALIQTSHGEITNE

Sequences:

>Translated_74_residues
MTDRTDKAEYFIIKALENGVNVMGLTRGHDTRFHHTEKLDQGEVMIAQFTEHTSAIKVRGKALIQTSHGEITNE
>Mature_73_residues
TDRTDKAEYFIIKALENGVNVMGLTRGHDTRFHHTEKLDQGEVMIAQFTEHTSAIKVRGKALIQTSHGEITNE

Specific function: Required for transcription attenuation control in the Trp operon. This trans-acting factor seems to recognize a 10 bases nucleotide sequence in the Trp leader transcript causing transcription termination. Binds the leader RNA only in presence of L-tryptop

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mtrB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MTRB_OCEIH (Q8EQB3)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692712.1
- ProteinModelPortal:   Q8EQB3
- SMR:   Q8EQB3
- GeneID:   1018285
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1791
- NMPDR:   fig|221109.1.peg.1792
- HOGENOM:   HBG312347
- OMA:   FHHSEKL
- ProtClustDB:   PRK13251
- BioCyc:   OIHE221109:OB1791-MONOMER
- HAMAP:   MF_00798
- InterPro:   IPR000824
- InterPro:   IPR016031
- Gene3D:   G3DSA:2.60.40.50
- PRINTS:   PR00687

Pfam domain/function: PF02081 TrpBP; SSF51219 TrpBP

EC number: NA

Molecular weight: Translated: 8369; Mature: 8237

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRTDKAEYFIIKALENGVNVMGLTRGHDTRFHHTEKLDQGEVMIAQFTEHTSAIKVRG
CCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECC
KALIQTSHGEITNE
EEEEEECCCCCCCC
>Mature Secondary Structure 
TDRTDKAEYFIIKALENGVNVMGLTRGHDTRFHHTEKLDQGEVMIAQFTEHTSAIKVRG
CCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECC
KALIQTSHGEITNE
EEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376