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The map label for this gene is opuBB [H]

Identifier: 23099146

GI number: 23099146

Start: 1729972

End: 1731498

Strand: Direct

Name: opuBB [H]

Synonym: OB1691

Alternate gene names: 23099146

Gene position: 1729972-1731498 (Clockwise)

Preceding gene: 23099145

Following gene: 23099147

Centisome position: 47.65

GC content: 36.94

Gene sequence:

>1527_bases
ATGAATGCGTTTATTGAGGTATTCCAGAATCGACAAGATATGTTTTATCAAGCTGTTTGGCAACATTTACAAATATCCTT
ATTGTCTTTAGCAATTGCAATTATACTTGCGGTTCCTATAGGAATTATATTAACCAGATATAAACGGTTAGCAGAACCAA
TTATTGGTGTGTCTGCGATTTTACAAACTATTCCGAGCCTTGCTGTATTAGCGTTTTTAATTCCTTTTTACGGTATTGGT
ACTACCCCAGCAATTATAGCATTAGTACTTTACGGTCTATTACCGATATTAAGAAATACGTACACGGGAATTGTTGAAGT
CGACCCTGCACTACGTGAGGCTGCTAGAGGAATGGGAATGAATACAGTAAAGCGCCTGCTGAAGGTCGAACTACCATTAG
CAATGCCAGTAATAATGGCAGGAATACGAACGTCAATGGTATTAATTGTTGGTACAACGACCATTGCAGCTTTAATAGGT
GCTGGAGGACTTGGAGATTTAATTTTACTAGGGCTTGATCGAGGTGGAGATATTCCGTTAGTACTATTAGGAGCAATCCC
TGCAGCCTTATTAGCAATTATTTTGGATGTCATATTGCGATTGTTTGAGAAACTATCAAAGAAATACGGAATACAGGCAT
TTTTGGTTATGCTTGCAGGAGTATTAATTATTTCAGTAGCTCCTTTCATCCTACAACAAGAAAGAGAACCTGATATAGTA
ATAGGCGGAAAGTTAGGTGCGGAGCCGGAAATTCTGATGAATATGTATAAATTACTAATAGAAGAAGAGACAAACCTTCA
AGTTGGATTAGAACCGAACTTAGGGAAGACTCCGATGGTATTTAATGCCTTACAAGAGGGTAGTATTGATATATATCCTG
AATTTACAGGAACAGTAATTGTTTCTCTATTAGATGAACAAGCGGAATCGAATGATTCCCAAGCAGTATATGAACAAGCA
AGAGATAGTATAAAGGAAGAATTCAACCTAGAATTACTAGAACCAATGGAATTTAATAATACGTATGCAGTTGCAGTTAC
TCAGGAATTAGCTGAACAGTATGATTTACAAACGATTGGCGACTTAGAAGCATATCAAGATAATTTGACAGCAGGCTTTA
CACTGGAGTTTAATGATCGATATGATGGATATGTAGGTATGCAAGAAGTATACGATATTAACTTCTCTGATGTTAAAACA
ATGGACCCAGGTTTAAGACAAGGTGCAATAGAAAGTGGAGAAGTAGATGTGATAGATGCTTATGCTACCGATAGTTATAT
GGTAGAATTAGAATTAGTTACACTAGAAGATCCCGAGAATCTATTTCCGCCGTATCAAGGTGCGCCGCTGATGAGAGAGG
ATACATTGGAACAATATCCAGAATTAGAAGCTATCTTAAATCAACTAAGTGGAAAAATCACTGATCAAGAGATGAGAGAA
ATGAATTATTTAGTTGATTACGAAGATGCTGCGGCAGAAGCTGTAGCGAGAGATTATCTAGTAAAAGAAGGCTTATTATC
TGAATAG

Upstream 100 bases:

>100_bases
CTGTACTTGATGAGAATGAAAAACTAATCGGCACTATTGGTACTCAAGAGATTGTTCACTATTTTTATGAACAAGATAAA
GGTCGGGGAGGAATTCCATC

Downstream 100 bases:

>100_bases
GAGGAGGAATAGTCATGGCTTGGCAAAATCCATCCAATGAAAAATTAAGCAATATTTTACAGACTGCAGAAACGATTGCG
GTAGTAGGGTTGTCCAATAA

Product: choline ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MNAFIEVFQNRQDMFYQAVWQHLQISLLSLAIAIILAVPIGIILTRYKRLAEPIIGVSAILQTIPSLAVLAFLIPFYGIG
TTPAIIALVLYGLLPILRNTYTGIVEVDPALREAARGMGMNTVKRLLKVELPLAMPVIMAGIRTSMVLIVGTTTIAALIG
AGGLGDLILLGLDRGGDIPLVLLGAIPAALLAIILDVILRLFEKLSKKYGIQAFLVMLAGVLIISVAPFILQQEREPDIV
IGGKLGAEPEILMNMYKLLIEEETNLQVGLEPNLGKTPMVFNALQEGSIDIYPEFTGTVIVSLLDEQAESNDSQAVYEQA
RDSIKEEFNLELLEPMEFNNTYAVAVTQELAEQYDLQTIGDLEAYQDNLTAGFTLEFNDRYDGYVGMQEVYDINFSDVKT
MDPGLRQGAIESGEVDVIDAYATDSYMVELELVTLEDPENLFPPYQGAPLMREDTLEQYPELEAILNQLSGKITDQEMRE
MNYLVDYEDAAAEAVARDYLVKEGLLSE

Sequences:

>Translated_508_residues
MNAFIEVFQNRQDMFYQAVWQHLQISLLSLAIAIILAVPIGIILTRYKRLAEPIIGVSAILQTIPSLAVLAFLIPFYGIG
TTPAIIALVLYGLLPILRNTYTGIVEVDPALREAARGMGMNTVKRLLKVELPLAMPVIMAGIRTSMVLIVGTTTIAALIG
AGGLGDLILLGLDRGGDIPLVLLGAIPAALLAIILDVILRLFEKLSKKYGIQAFLVMLAGVLIISVAPFILQQEREPDIV
IGGKLGAEPEILMNMYKLLIEEETNLQVGLEPNLGKTPMVFNALQEGSIDIYPEFTGTVIVSLLDEQAESNDSQAVYEQA
RDSIKEEFNLELLEPMEFNNTYAVAVTQELAEQYDLQTIGDLEAYQDNLTAGFTLEFNDRYDGYVGMQEVYDINFSDVKT
MDPGLRQGAIESGEVDVIDAYATDSYMVELELVTLEDPENLFPPYQGAPLMREDTLEQYPELEAILNQLSGKITDQEMRE
MNYLVDYEDAAAEAVARDYLVKEGLLSE
>Mature_508_residues
MNAFIEVFQNRQDMFYQAVWQHLQISLLSLAIAIILAVPIGIILTRYKRLAEPIIGVSAILQTIPSLAVLAFLIPFYGIG
TTPAIIALVLYGLLPILRNTYTGIVEVDPALREAARGMGMNTVKRLLKVELPLAMPVIMAGIRTSMVLIVGTTTIAALIG
AGGLGDLILLGLDRGGDIPLVLLGAIPAALLAIILDVILRLFEKLSKKYGIQAFLVMLAGVLIISVAPFILQQEREPDIV
IGGKLGAEPEILMNMYKLLIEEETNLQVGLEPNLGKTPMVFNALQEGSIDIYPEFTGTVIVSLLDEQAESNDSQAVYEQA
RDSIKEEFNLELLEPMEFNNTYAVAVTQELAEQYDLQTIGDLEAYQDNLTAGFTLEFNDRYDGYVGMQEVYDINFSDVKT
MDPGLRQGAIESGEVDVIDAYATDSYMVELELVTLEDPENLFPPYQGAPLMREDTLEQYPELEAILNQLSGKITDQEMRE
MNYLVDYEDAAAEAVARDYLVKEGLLSE

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=200, Percent_Identity=44, Blast_Score=138, Evalue=7e-34,
Organism=Escherichia coli, GI1788451, Length=216, Percent_Identity=39.8148148148148, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1788452, Length=306, Percent_Identity=29.0849673202614, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789033, Length=178, Percent_Identity=36.5168539325843, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081802, Length=156, Percent_Identity=32.6923076923077, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 55999; Mature: 55999

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAFIEVFQNRQDMFYQAVWQHLQISLLSLAIAIILAVPIGIILTRYKRLAEPIIGVSAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTIPSLAVLAFLIPFYGIGTTPAIIALVLYGLLPILRNTYTGIVEVDPALREAARGMGM
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCH
NTVKRLLKVELPLAMPVIMAGIRTSMVLIVGTTTIAALIGAGGLGDLILLGLDRGGDIPL
HHHHHHHHHHCCHHHHHHHHHHHHHEEEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
VLLGAIPAALLAIILDVILRLFEKLSKKYGIQAFLVMLAGVLIISVAPFILQQEREPDIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IGGKLGAEPEILMNMYKLLIEEETNLQVGLEPNLGKTPMVFNALQEGSIDIYPEFTGTVI
ECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHCCCEEEECCHHHHHH
VSLLDEQAESNDSQAVYEQARDSIKEEFNLELLEPMEFNNTYAVAVTQELAEQYDLQTIG
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEHHHHHHHCCCHHHH
DLEAYQDNLTAGFTLEFNDRYDGYVGMQEVYDINFSDVKTMDPGLRQGAIESGEVDVIDA
HHHHHHCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCEEEEEE
YATDSYMVELELVTLEDPENLFPPYQGAPLMREDTLEQYPELEAILNQLSGKITDQEMRE
ECCCCEEEEEEEEEECCCHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCHHHHHH
MNYLVDYEDAAAEAVARDYLVKEGLLSE
HHHHCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNAFIEVFQNRQDMFYQAVWQHLQISLLSLAIAIILAVPIGIILTRYKRLAEPIIGVSAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTIPSLAVLAFLIPFYGIGTTPAIIALVLYGLLPILRNTYTGIVEVDPALREAARGMGM
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCH
NTVKRLLKVELPLAMPVIMAGIRTSMVLIVGTTTIAALIGAGGLGDLILLGLDRGGDIPL
HHHHHHHHHHCCHHHHHHHHHHHHHEEEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
VLLGAIPAALLAIILDVILRLFEKLSKKYGIQAFLVMLAGVLIISVAPFILQQEREPDIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IGGKLGAEPEILMNMYKLLIEEETNLQVGLEPNLGKTPMVFNALQEGSIDIYPEFTGTVI
ECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHCCCEEEECCHHHHHH
VSLLDEQAESNDSQAVYEQARDSIKEEFNLELLEPMEFNNTYAVAVTQELAEQYDLQTIG
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEHHHHHHHCCCHHHH
DLEAYQDNLTAGFTLEFNDRYDGYVGMQEVYDINFSDVKTMDPGLRQGAIESGEVDVIDA
HHHHHHCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCEEEEEE
YATDSYMVELELVTLEDPENLFPPYQGAPLMREDTLEQYPELEAILNQLSGKITDQEMRE
ECCCCEEEEEEEEEECCCHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCHHHHHH
MNYLVDYEDAAAEAVARDYLVKEGLLSE
HHHHCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]