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The map label for this gene is yhaM

Identifier: 23098601

GI number: 23098601

Start: 1199103

End: 1200056

Strand: Direct

Name: yhaM

Synonym: OB1146

Alternate gene names: 23098601

Gene position: 1199103-1200056 (Clockwise)

Preceding gene: 23098600

Following gene: 23098602

Centisome position: 33.03

GC content: 35.53

Gene sequence:

>954_bases
ATGAAAAATGGTATTGCATTTCGCACGATTGGAGAAGAATTTGATGGATTTCTTTTAATTAAAGAGTCTACAAGGGGTAC
TACTAGTAATGGAAAACCATTTCTAACCTTAATACTTCGTGATGCTAGTGGTGAAATAGAAGCAAAACTTTGGGATGCAA
CGAAAGATGATGAAGAAACACTGATTCCAGAGCAAATAATTCAAGTCACAGGTGAAATTAACCAATTTAGGGGCAAGCAT
CAATTAAAAATATTATCTATCCGTCTTTCACAACCAATGGATAACGTTCAAGTAACAGACTTTTTAGGTAAAGCACCTAT
GGAAAAGGAAGAATTGGCAGAAAAGCTGACTGAGGCTATTTTTGAGATGGAGAATCCTAAAATTCAACGTCTAGTTCGTG
CTTTTATAAAGAAATATCAGGAAGAGTTACTAACCTATCCAGCAGCTACCAAAAATCATCATGAATTTGCGTCCGGACTA
GCATATCATGTGGTTAGTATGTTAGCTATTGGTAAAGAATTGCATAAGCTTTATCCAGAAATCAATAGAGACTTATTATA
TGCAGGAATTATACTGCATGATATTGGTAAGATTAAAGAGCTTTCTGGTGTTGTTTCTACTACCTATACGTTAGAAGGAA
AAATGCTCGGACATATACCGATGATGGTTGAAGAAATTGGCTTAATGGCTAATGAGTTACAAATCGAAGGTGAAGAGGTA
CTTATTTTAAAACATCTCGTTTTAAGTCATCACGGAAAAGCAGAGTGGGGGAGCCCTACACCACCATTAGTCCGTGAAGC
AGAACTACTACATTTAATTGATTTAATAGATGCAAAAATGAATATGTTAGGTAGGGCATTGGAAAAAATTCAACCAGGAG
AATTTACGGAGAGGCTTTTCGCTATGGATAATCGTGCTTTTTACAAACCAAATTTTGAAGAAAATGAAGGATAG

Upstream 100 bases:

>100_bases
GTACTGCTGAAAATCAACAAGTGATTTTATTTACATGTAAAGAAGAAATTATGCAGCTAGTAGAAGGGGAAGTATTGCAA
TTATAGTAGGGGGAGATTAG

Downstream 100 bases:

>100_bases
GTTATTTTTTCTTTCCTCGTTCATATATATAGTATTAAGGTTTGGACAAGGAGGAAAAATAGATGGAGTCAATTCCTATT
TGGGTTATAGCAGTCATCTT

Product: 3'-5' exoribonuclease YhaM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKNGIAFRTIGEEFDGFLLIKESTRGTTSNGKPFLTLILRDASGEIEAKLWDATKDDEETLIPEQIIQVTGEINQFRGKH
QLKILSIRLSQPMDNVQVTDFLGKAPMEKEELAEKLTEAIFEMENPKIQRLVRAFIKKYQEELLTYPAATKNHHEFASGL
AYHVVSMLAIGKELHKLYPEINRDLLYAGIILHDIGKIKELSGVVSTTYTLEGKMLGHIPMMVEEIGLMANELQIEGEEV
LILKHLVLSHHGKAEWGSPTPPLVREAELLHLIDLIDAKMNMLGRALEKIQPGEFTERLFAMDNRAFYKPNFEENEG

Sequences:

>Translated_317_residues
MKNGIAFRTIGEEFDGFLLIKESTRGTTSNGKPFLTLILRDASGEIEAKLWDATKDDEETLIPEQIIQVTGEINQFRGKH
QLKILSIRLSQPMDNVQVTDFLGKAPMEKEELAEKLTEAIFEMENPKIQRLVRAFIKKYQEELLTYPAATKNHHEFASGL
AYHVVSMLAIGKELHKLYPEINRDLLYAGIILHDIGKIKELSGVVSTTYTLEGKMLGHIPMMVEEIGLMANELQIEGEEV
LILKHLVLSHHGKAEWGSPTPPLVREAELLHLIDLIDAKMNMLGRALEKIQPGEFTERLFAMDNRAFYKPNFEENEG
>Mature_317_residues
MKNGIAFRTIGEEFDGFLLIKESTRGTTSNGKPFLTLILRDASGEIEAKLWDATKDDEETLIPEQIIQVTGEINQFRGKH
QLKILSIRLSQPMDNVQVTDFLGKAPMEKEELAEKLTEAIFEMENPKIQRLVRAFIKKYQEELLTYPAATKNHHEFASGL
AYHVVSMLAIGKELHKLYPEINRDLLYAGIILHDIGKIKELSGVVSTTYTLEGKMLGHIPMMVEEIGLMANELQIEGEEV
LILKHLVLSHHGKAEWGSPTPPLVREAELLHLIDLIDAKMNMLGRALEKIQPGEFTERLFAMDNRAFYKPNFEENEG

Specific function: Shows a 3'-5' exoribonuclease activity

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHAM_OCEIH (Q8CUG1)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692067.1
- ProteinModelPortal:   Q8CUG1
- GeneID:   1017262
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1146
- NMPDR:   fig|221109.1.peg.1147
- HOGENOM:   HBG712169
- OMA:   IAFTFQD
- ProtClustDB:   PRK13480
- BioCyc:   OIHE221109:OB1146-MONOMER
- HAMAP:   MF_01427
- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365
- Gene3D:   G3DSA:2.40.50.140
- SMART:   SM00471

Pfam domain/function: PF01336 tRNA_anti; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 35933; Mature: 35933

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNGIAFRTIGEEFDGFLLIKESTRGTTSNGKPFLTLILRDASGEIEAKLWDATKDDEET
CCCCCEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCHH
LIPEQIIQVTGEINQFRGKHQLKILSIRLSQPMDNVQVTDFLGKAPMEKEELAEKLTEAI
HCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHH
FEMENPKIQRLVRAFIKKYQEELLTYPAATKNHHEFASGLAYHVVSMLAIGKELHKLYPE
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INRDLLYAGIILHDIGKIKELSGVVSTTYTLEGKMLGHIPMMVEEIGLMANELQIEGEEV
HCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHEEECCCHH
LILKHLVLSHHGKAEWGSPTPPLVREAELLHLIDLIDAKMNMLGRALEKIQPGEFTERLF
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AMDNRAFYKPNFEENEG
HHCCCCEECCCCCCCCC
>Mature Secondary Structure
MKNGIAFRTIGEEFDGFLLIKESTRGTTSNGKPFLTLILRDASGEIEAKLWDATKDDEET
CCCCCEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCHH
LIPEQIIQVTGEINQFRGKHQLKILSIRLSQPMDNVQVTDFLGKAPMEKEELAEKLTEAI
HCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHH
FEMENPKIQRLVRAFIKKYQEELLTYPAATKNHHEFASGLAYHVVSMLAIGKELHKLYPE
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INRDLLYAGIILHDIGKIKELSGVVSTTYTLEGKMLGHIPMMVEEIGLMANELQIEGEEV
HCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHEEECCCHH
LILKHLVLSHHGKAEWGSPTPPLVREAELLHLIDLIDAKMNMLGRALEKIQPGEFTERLF
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AMDNRAFYKPNFEENEG
HHCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376