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The map label for this gene is sigI [H]

Identifier: 23098557

GI number: 23098557

Start: 1156745

End: 1157473

Strand: Direct

Name: sigI [H]

Synonym: OB1102

Alternate gene names: 23098557

Gene position: 1156745-1157473 (Clockwise)

Preceding gene: 23098556

Following gene: 23098558

Centisome position: 31.86

GC content: 32.37

Gene sequence:

>729_bases
GTGATGATGAGTCAACTAAAGGAAACTCCTATAGAAGATAAAGTATATGCAATTCAACAAGGGAACAAATTTTTGCAAAA
TGAATTACTAAGAACGTATCAACCTTTTATAGCTAAGTGTGTATCGGAAGTATGTAAAAGATATATTGATCCAAAAAGAG
ATGATGAATTTAGTATCGGATTGTCGGCTTTTAACGAAGCTATATTTTCGTATGTTCCAAATAAAGGAAGTTCTTTTTTA
TCGTTTGCAAAATTAGTTATTAAACGGAAAGTTATTGATTATATCCGTTATCAGCAAAAGAGGACTGCGTCTTTATCATT
AGATGAAACCTATGATGAAGAGCAAATGGAAAACTCACTGGAAATAGCTGCAGTTCAAGAAAAATACCAAATGGAGATTG
ATGCTCAAAACAGGAAAGAAGAAATTCTAGAATTTAAAGAGAAATTAAAGTTATACAAATTGTCATTAGTTGAATTAACT
GAGGTATCGCCAAAACATCGTGATGCCCGAGAATCCGCAGTGAAAACTGCACGAATTCTTTTTAACGACCCAATTCTCAG
GGAATATGTATACAGAAAGAAAAAACTCCCTATTAAAGATTTGGTGAAAAAAGTCGATGTTAGTAAAAAAACATTGGAAA
GAAATAGAAAGTTTATACTCGCAATGTTTATTGTGCTTAGTGAGGACTATATCTATCTTAAGGAATATCTTAAGGGAGTG
GGGCAATGA

Upstream 100 bases:

>100_bases
TAAAACAAATTATAATGAAAAGTACATATAAAATTAAAAATAATACACCCGAAAAGATAAAGAAAAATACGAATGATATG
ATGGTTGGGAGGTTCCTAAT

Downstream 100 bases:

>100_bases
AAAAAGGAATTGTGATGGAAAGGCATCGCAAATATACCATTTTAATGACAAAAGATGGTTCCTTTGTTAAAGGGAGAGTA
CTTTCGAATCAATCTGAGAT

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MMMSQLKETPIEDKVYAIQQGNKFLQNELLRTYQPFIAKCVSEVCKRYIDPKRDDEFSIGLSAFNEAIFSYVPNKGSSFL
SFAKLVIKRKVIDYIRYQQKRTASLSLDETYDEEQMENSLEIAAVQEKYQMEIDAQNRKEEILEFKEKLKLYKLSLVELT
EVSPKHRDARESAVKTARILFNDPILREYVYRKKKLPIKDLVKKVDVSKKTLERNRKFILAMFIVLSEDYIYLKEYLKGV
GQ

Sequences:

>Translated_242_residues
MMMSQLKETPIEDKVYAIQQGNKFLQNELLRTYQPFIAKCVSEVCKRYIDPKRDDEFSIGLSAFNEAIFSYVPNKGSSFL
SFAKLVIKRKVIDYIRYQQKRTASLSLDETYDEEQMENSLEIAAVQEKYQMEIDAQNRKEEILEFKEKLKLYKLSLVELT
EVSPKHRDARESAVKTARILFNDPILREYVYRKKKLPIKDLVKKVDVSKKTLERNRKFILAMFIVLSEDYIYLKEYLKGV
GQ
>Mature_242_residues
MMMSQLKETPIEDKVYAIQQGNKFLQNELLRTYQPFIAKCVSEVCKRYIDPKRDDEFSIGLSAFNEAIFSYVPNKGSSFL
SFAKLVIKRKVIDYIRYQQKRTASLSLDETYDEEQMENSLEIAAVQEKYQMEIDAQNRKEEILEFKEKLKLYKLSLVELT
EVSPKHRDARESAVKTARILFNDPILREYVYRKKKLPIKDLVKKVDVSKKTLERNRKFILAMFIVLSEDYIYLKEYLKGV
GQ

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 28572; Mature: 28572

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMSQLKETPIEDKVYAIQQGNKFLQNELLRTYQPFIAKCVSEVCKRYIDPKRDDEFSIG
CCHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LSAFNEAIFSYVPNKGSSFLSFAKLVIKRKVIDYIRYQQKRTASLSLDETYDEEQMENSL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHH
EIAAVQEKYQMEIDAQNRKEEILEFKEKLKLYKLSLVELTEVSPKHRDARESAVKTARIL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
FNDPILREYVYRKKKLPIKDLVKKVDVSKKTLERNRKFILAMFIVLSEDYIYLKEYLKGV
HCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
GQ
CC
>Mature Secondary Structure
MMMSQLKETPIEDKVYAIQQGNKFLQNELLRTYQPFIAKCVSEVCKRYIDPKRDDEFSIG
CCHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LSAFNEAIFSYVPNKGSSFLSFAKLVIKRKVIDYIRYQQKRTASLSLDETYDEEQMENSL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHH
EIAAVQEKYQMEIDAQNRKEEILEFKEKLKLYKLSLVELTEVSPKHRDARESAVKTARIL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
FNDPILREYVYRKKKLPIKDLVKKVDVSKKTLERNRKFILAMFIVLSEDYIYLKEYLKGV
HCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
GQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]