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The map label for this gene is cspD [H]

Identifier: 23098474

GI number: 23098474

Start: 1061841

End: 1062041

Strand: Reverse

Name: cspD [H]

Synonym: OB1019

Alternate gene names: 23098474

Gene position: 1062041-1061841 (Counterclockwise)

Preceding gene: 23098489

Following gene: 23098470

Centisome position: 29.25

GC content: 40.3

Gene sequence:

>201_bases
ATGAACACAGGTTCAGTAAAATGGTTTAACGCAGAAAAAGGCTTCGGTTTCATCGAAGTTGAAGGTGGAGACGATGTATT
CGTACACTTCTCAGCAATCCAAGGCGAAGGTTTCAAAACATTAGAAGAAGGTCAATCAGTTTCTTTCGATATCGAAGAAG
GTAACCGTGGACCTCAAGCAGCTAACGTTGTTAAAAACTAA

Upstream 100 bases:

>100_bases
ATACAGGATAGAATGTTTCAATGTAACGAGCTTTTGTCTTGATTGTAAACTTGAACTAAATAGTAATATATCGTGCATTA
TGCACATGGAGGTTTTCAAT

Downstream 100 bases:

>100_bases
TTAGTTTGCTGATTTAAAACCATCGATTTTTATCGATGGTTTTTTAGTGCAAAAAAATCTCCTTTACTAGTAAAGGAGAT
TTTTTCATATTACTTAAATT

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MNTGSVKWFNAEKGFGFIEVEGGDDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGNRGPQAANVVKN

Sequences:

>Translated_66_residues
MNTGSVKWFNAEKGFGFIEVEGGDDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGNRGPQAANVVKN
>Mature_66_residues
MNTGSVKWFNAEKGFGFIEVEGGDDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGNRGPQAANVVKN

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=66.6666666666667, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1789979, Length=63, Percent_Identity=66.6666666666667, Blast_Score=85, Evalue=7e-19,
Organism=Escherichia coli, GI2367114, Length=63, Percent_Identity=66.6666666666667, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=66.1290322580645, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=67.741935483871, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1787834, Length=63, Percent_Identity=65.0793650793651, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=53.8461538461538, Blast_Score=75, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7154; Mature: 7154

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTGSVKWFNAEKGFGFIEVEGGDDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGNRGPQA
CCCCCEEEEECCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
ANVVKN
CCCCCC
>Mature Secondary Structure
MNTGSVKWFNAEKGFGFIEVEGGDDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGNRGPQA
CCCCCEEEEECCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
ANVVKN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631682 [H]