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The map label for this gene is yocS [H]

Identifier: 23098449

GI number: 23098449

Start: 1038600

End: 1039574

Strand: Direct

Name: yocS [H]

Synonym: OB0994

Alternate gene names: 23098449

Gene position: 1038600-1039574 (Clockwise)

Preceding gene: 23098448

Following gene: 23098450

Centisome position: 28.61

GC content: 37.03

Gene sequence:

>975_bases
TTGAAATCTTTAGAGAAAGTAAGCATTTTTGCAGGTAATACCTTTGCGATATGGGTGTTGTTATTTGGGGTGATTAGTTT
TATTTTTCCAAGTGGATTCTCTTGGATCGCTCCACATATTTCGCTACTTCTTGGAATTATTATGTTTGGAATGGGGTTGA
CACTTACTCCAAATGACTTCAAAGGGGTAATAAAGACACCGAAAAGTGTATTAATTGCTGTAATATTGCAATATACCATT
ATGCCAATTATTGCATATTGTCTTGCTGTAGTTTTTCAACTTCCTCCAGCAATTGCGGTGGGAGTCATACTAGTAGGGTG
TTGTCCGGGTGGCACTGCGTCTAATGTTATGACATATTTAGCTAAGGGTAATACTGCGTTATCCGTATCCGTGACAACAA
TATCTACATTAATTGCACCAATTATGACACCTACATTAACATTGTTATTAGCGAGTGAATGGATGGCTGTCTCATTTATG
AGTATGTTTATATCCATTATACAGGTAGTATTACTACCAATAGTGCTAGGTGTAGGGGTACGTATGTTATTCCGTAATCA
AGTGGAAAAAAGCGTATCGGTTCTACCGCTTGTATCTGTAATCGGAATTGTTGCAGTAGCAAGTGCGGTTGTTGCCGTAA
ATACTGAAGCAATTGCAACATCAGGTTTATTGATTTTTGGAGTTGTTATGCTACATAATTTATTAGGTTTATTCTTAGGA
TTTCTCATTGCAAAATTAGCTAAACTCGATTTTTCCGATCGAAAAGCAATATCGATTGAAGTAGGTATGCAAAATTCTGG
CCTCGCTTCAACGCTTGCATTAACAGCTTTTGCAACAACACCAGTTGCCGCTGTACCAAGCGCGATTTTCAGTGTATGGC
ATAATATATCTGGGCCATTATTAGCAACATATTGGTCAAAAAAGGGCGATAAAGATATTTCCATTATCCAAGAAAAAGTT
GAAAATCTAGGATAA

Upstream 100 bases:

>100_bases
TATGTAACTTTTTACCACATTAAATTGTTAAATAGTATAGACTTTATTATCAGATTATTGTTATTATAATGAGAATACAA
ACAGATTGGAGGAAGATGTC

Downstream 100 bases:

>100_bases
AAGCAATATCTAGAATTTATCATCTTTATCTCACACAATAAAAATACTGTGTAATAATTTATACAGTATTAGAAAATCCT
AGATAATAATATATTGAAAA

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MKSLEKVSIFAGNTFAIWVLLFGVISFIFPSGFSWIAPHISLLLGIIMFGMGLTLTPNDFKGVIKTPKSVLIAVILQYTI
MPIIAYCLAVVFQLPPAIAVGVILVGCCPGGTASNVMTYLAKGNTALSVSVTTISTLIAPIMTPTLTLLLASEWMAVSFM
SMFISIIQVVLLPIVLGVGVRMLFRNQVEKSVSVLPLVSVIGIVAVASAVVAVNTEAIATSGLLIFGVVMLHNLLGLFLG
FLIAKLAKLDFSDRKAISIEVGMQNSGLASTLALTAFATTPVAAVPSAIFSVWHNISGPLLATYWSKKGDKDISIIQEKV
ENLG

Sequences:

>Translated_324_residues
MKSLEKVSIFAGNTFAIWVLLFGVISFIFPSGFSWIAPHISLLLGIIMFGMGLTLTPNDFKGVIKTPKSVLIAVILQYTI
MPIIAYCLAVVFQLPPAIAVGVILVGCCPGGTASNVMTYLAKGNTALSVSVTTISTLIAPIMTPTLTLLLASEWMAVSFM
SMFISIIQVVLLPIVLGVGVRMLFRNQVEKSVSVLPLVSVIGIVAVASAVVAVNTEAIATSGLLIFGVVMLHNLLGLFLG
FLIAKLAKLDFSDRKAISIEVGMQNSGLASTLALTAFATTPVAAVPSAIFSVWHNISGPLLATYWSKKGDKDISIIQEKV
ENLG
>Mature_324_residues
MKSLEKVSIFAGNTFAIWVLLFGVISFIFPSGFSWIAPHISLLLGIIMFGMGLTLTPNDFKGVIKTPKSVLIAVILQYTI
MPIIAYCLAVVFQLPPAIAVGVILVGCCPGGTASNVMTYLAKGNTALSVSVTTISTLIAPIMTPTLTLLLASEWMAVSFM
SMFISIIQVVLLPIVLGVGVRMLFRNQVEKSVSVLPLVSVIGIVAVASAVVAVNTEAIATSGLLIFGVVMLHNLLGLFLG
FLIAKLAKLDFSDRKAISIEVGMQNSGLASTLALTAFATTPVAAVPSAIFSVWHNISGPLLATYWSKKGDKDISIIQEKV
ENLG

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=294, Percent_Identity=31.2925170068027, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI37537552, Length=242, Percent_Identity=27.2727272727273, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4506971, Length=268, Percent_Identity=30.2238805970149, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI215422370, Length=214, Percent_Identity=28.5046728971963, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI9790143, Length=214, Percent_Identity=28.5046728971963, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI215422368, Length=214, Percent_Identity=28.5046728971963, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI24308414, Length=241, Percent_Identity=27.8008298755187, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI18859699, Length=296, Percent_Identity=29.0540540540541, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 34258; Mature: 34258

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLEKVSIFAGNTFAIWVLLFGVISFIFPSGFSWIAPHISLLLGIIMFGMGLTLTPNDF
CCCCHHEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
KGVIKTPKSVLIAVILQYTIMPIIAYCLAVVFQLPPAIAVGVILVGCCPGGTASNVMTYL
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHH
AKGNTALSVSVTTISTLIAPIMTPTLTLLLASEWMAVSFMSMFISIIQVVLLPIVLGVGV
HCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMLFRNQVEKSVSVLPLVSVIGIVAVASAVVAVNTEAIATSGLLIFGVVMLHNLLGLFLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
FLIAKLAKLDFSDRKAISIEVGMQNSGLASTLALTAFATTPVAAVPSAIFSVWHNISGPL
HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
LATYWSKKGDKDISIIQEKVENLG
HHHHHCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKSLEKVSIFAGNTFAIWVLLFGVISFIFPSGFSWIAPHISLLLGIIMFGMGLTLTPNDF
CCCCHHEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
KGVIKTPKSVLIAVILQYTIMPIIAYCLAVVFQLPPAIAVGVILVGCCPGGTASNVMTYL
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHH
AKGNTALSVSVTTISTLIAPIMTPTLTLLLASEWMAVSFMSMFISIIQVVLLPIVLGVGV
HCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMLFRNQVEKSVSVLPLVSVIGIVAVASAVVAVNTEAIATSGLLIFGVVMLHNLLGLFLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
FLIAKLAKLDFSDRKAISIEVGMQNSGLASTLALTAFATTPVAAVPSAIFSVWHNISGPL
HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
LATYWSKKGDKDISIIQEKVENLG
HHHHHCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]