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The map label for this gene is tnrA [H]

Identifier: 23098405

GI number: 23098405

Start: 996548

End: 996850

Strand: Direct

Name: tnrA [H]

Synonym: OB0950

Alternate gene names: 23098405

Gene position: 996548-996850 (Clockwise)

Preceding gene: 23098404

Following gene: 23098406

Centisome position: 27.45

GC content: 33.99

Gene sequence:

>303_bases
ATGACTTCATACAAGAACAAAAAAGTCATTACCATTGGAATAGTAAATGAATTAACTGGTCTTTCTGTACGACAAATTCG
TTATTATGAAGAGCGGGGATTAATTTACCCAGAAAGATCGAAAAATGGTACTCGAAAATATTCCTTCTCTGATATCGAGA
CACTGATGAATATTGCAGAGCAGCGAGAAGAAGGTGTGCAAACTAGAGAAATAAAACATAATATGCAGAAAAAGAAAAAC
AAGCAAAAGGTTAAGGAAGAGATGCTCCGTGGACAGATTAACGCACATTTTCATAAAAAATAA

Upstream 100 bases:

>100_bases
TTTAATGAATTAACAAATGTAATGAAAATTACTTGGTATAATGTAAAGATATATCAATACATGGATAATTTTGTAATTAA
TTAAATAGGGGAGGAAAAGT

Downstream 100 bases:

>100_bases
CTGTGTAGTGAAATATAAAGCTGTTGAAATTTATTGTTAGAAAATCTTACAAATGAATTGCAGTATGATAGGAACTCCTT
TTTAATGTATAAGTATAAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTSYKNKKVITIGIVNELTGLSVRQIRYYEERGLIYPERSKNGTRKYSFSDIETLMNIAEQREEGVQTREIKHNMQKKKN
KQKVKEEMLRGQINAHFHKK

Sequences:

>Translated_100_residues
MTSYKNKKVITIGIVNELTGLSVRQIRYYEERGLIYPERSKNGTRKYSFSDIETLMNIAEQREEGVQTREIKHNMQKKKN
KQKVKEEMLRGQINAHFHKK
>Mature_99_residues
TSYKNKKVITIGIVNELTGLSVRQIRYYEERGLIYPERSKNGTRKYSFSDIETLMNIAEQREEGVQTREIKHNMQKKKNK
QKVKEEMLRGQINAHFHKK

Specific function: Regulator of transcription that activates or represses many genes during nitrogen-limited growth; among others, it activates nrgAB, nasABCDE, gabP, and represses glnRA [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 11915; Mature: 11784

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSYKNKKVITIGIVNELTGLSVRQIRYYEERGLIYPERSKNGTRKYSFSDIETLMNIAE
CCCCCCCEEEEEEECCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
QREEGVQTREIKHNMQKKKNKQKVKEEMLRGQINAHFHKK
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TSYKNKKVITIGIVNELTGLSVRQIRYYEERGLIYPERSKNGTRKYSFSDIETLMNIAE
CCCCCCEEEEEEECCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
QREEGVQTREIKHNMQKKKNKQKVKEEMLRGQINAHFHKK
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8799114; 9384377; 11719184 [H]