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The map label for this gene is yfdE [H]

Identifier: 23098320

GI number: 23098320

Start: 917651

End: 918796

Strand: Reverse

Name: yfdE [H]

Synonym: OB0865

Alternate gene names: 23098320

Gene position: 918796-917651 (Counterclockwise)

Preceding gene: 23098321

Following gene: 23098319

Centisome position: 25.31

GC content: 36.39

Gene sequence:

>1146_bases
TTGTCGATGAGTTTAGAAGGGTTAAAGATTTTGGATCTTACTCGTGTTCTTGCTGGTCCTTATTGTACTATGATTCTGGC
TGATTTAGGCGCTGAAGTAATTAAAGTAGAAGCTCCTGGAGGAAGTGATGAAACTAGAGATTGGGGTCCCCCATTTCAAC
ATGGAGTAAGTGCATATTACCTTTGTGCAAATCGAAATAAAAAGAGTATTACAATTGACCTTAAATCCTCAAGTGGTATT
CATTATTTGAAGGAACTTGTTAAAGAATCAGATGTAATTGTAAATAATTTTAAGTCTGGCACGATGGAACGTTTTGGATT
AGATTATCAAACACTTTCCACGCTTAATCCAAGTATTATATATGCATCTATAACTGGCTTTGGTGAAACTGGTCCATATA
AGGATATGCCTGGATATGACTTCATTATTCAAGCAATGAGCGGGCTAATGAGTATTACAGGTAGCCCCGAATCTGGACCG
CAAAAAGTCGGTATTGCAATAACAGATGTATTAACTGGCTTATATACTTGTATTGGAATCCAAGCAGCCTTGTTAGAAAG
ACAGCAATCAGGTAAAGGACAAAAAATAGATATATCCTTATATGATACCGCTGTTAGTTCTTTAGTAAATGTTGCAAGTA
ATTATTTAATGTCAGGTCAAAATCCAAAATCACTAGGAAATAATCACCCAAATATTGTACCTTACCAAACATTTAAGACC
GAAGATAAAGATATTGTTATCGCGGTAGGAAATGATGCACAATTTAAGAGATTGTGCCACATACTCCAATTAGATGACCT
ATTAAACGATAATCGATTTCGAACAAACGCCAGCCGTGTTCAACATCGTGACATTTTAATCCCATTACTTCAAGAATCTC
TAATACTCCAACCAGCTGATTACTGGATAAAAGCTTTACAAGAAGAAAAAATTCCATGTGGTCCAATCCAAACTATCGAT
AAACTTCCCAAAGACCCACAATTACAAAGTAGAGAAATGTTTGTATCTATGCATCATCAAACGGCAGGTCCAATCAAACT
TATTGGTAACCCACTGAAATTTTCCAGGACACCAATTACCTATCGTCACGCACCGCCTAACCCTGGAGAACATAACACCG
ATTATATACATTTGAAAGGAGATTAG

Upstream 100 bases:

>100_bases
GCCAGAGTAGCTACCCACAAAAAGCCAGTTCAAATAATTGCTTAACGCAATGATATTTGAACTGGCTTTTTTCATTCATG
TATAAGGAGGGAATACAATT

Downstream 100 bases:

>100_bases
GAAATAATGGATTTTCATTTTAGCGAGGAACAACAACTATTAAGAAAGACAGTCAGAGATTTTACTGACAAGGAAATTAT
GCCTTATATTAGCGAATGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSMSLEGLKILDLTRVLAGPYCTMILADLGAEVIKVEAPGGSDETRDWGPPFQHGVSAYYLCANRNKKSITIDLKSSSGI
HYLKELVKESDVIVNNFKSGTMERFGLDYQTLSTLNPSIIYASITGFGETGPYKDMPGYDFIIQAMSGLMSITGSPESGP
QKVGIAITDVLTGLYTCIGIQAALLERQQSGKGQKIDISLYDTAVSSLVNVASNYLMSGQNPKSLGNNHPNIVPYQTFKT
EDKDIVIAVGNDAQFKRLCHILQLDDLLNDNRFRTNASRVQHRDILIPLLQESLILQPADYWIKALQEEKIPCGPIQTID
KLPKDPQLQSREMFVSMHHQTAGPIKLIGNPLKFSRTPITYRHAPPNPGEHNTDYIHLKGD

Sequences:

>Translated_381_residues
MSMSLEGLKILDLTRVLAGPYCTMILADLGAEVIKVEAPGGSDETRDWGPPFQHGVSAYYLCANRNKKSITIDLKSSSGI
HYLKELVKESDVIVNNFKSGTMERFGLDYQTLSTLNPSIIYASITGFGETGPYKDMPGYDFIIQAMSGLMSITGSPESGP
QKVGIAITDVLTGLYTCIGIQAALLERQQSGKGQKIDISLYDTAVSSLVNVASNYLMSGQNPKSLGNNHPNIVPYQTFKT
EDKDIVIAVGNDAQFKRLCHILQLDDLLNDNRFRTNASRVQHRDILIPLLQESLILQPADYWIKALQEEKIPCGPIQTID
KLPKDPQLQSREMFVSMHHQTAGPIKLIGNPLKFSRTPITYRHAPPNPGEHNTDYIHLKGD
>Mature_380_residues
SMSLEGLKILDLTRVLAGPYCTMILADLGAEVIKVEAPGGSDETRDWGPPFQHGVSAYYLCANRNKKSITIDLKSSSGIH
YLKELVKESDVIVNNFKSGTMERFGLDYQTLSTLNPSIIYASITGFGETGPYKDMPGYDFIIQAMSGLMSITGSPESGPQ
KVGIAITDVLTGLYTCIGIQAALLERQQSGKGQKIDISLYDTAVSSLVNVASNYLMSGQNPKSLGNNHPNIVPYQTFKTE
DKDIVIAVGNDAQFKRLCHILQLDDLLNDNRFRTNASRVQHRDILIPLLQESLILQPADYWIKALQEEKIPCGPIQTIDK
LPKDPQLQSREMFVSMHHQTAGPIKLIGNPLKFSRTPITYRHAPPNPGEHNTDYIHLKGD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=369, Percent_Identity=43.360433604336, Blast_Score=324, Evalue=9e-89,
Organism=Homo sapiens, GI300863124, Length=395, Percent_Identity=41.0126582278481, Blast_Score=310, Evalue=1e-84,
Organism=Homo sapiens, GI300863126, Length=369, Percent_Identity=39.0243902439024, Blast_Score=270, Evalue=2e-72,
Organism=Homo sapiens, GI13376042, Length=395, Percent_Identity=37.9746835443038, Blast_Score=269, Evalue=3e-72,
Organism=Homo sapiens, GI266458393, Length=329, Percent_Identity=28.8753799392097, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI266456254, Length=258, Percent_Identity=31.0077519379845, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI42794625, Length=258, Percent_Identity=31.0077519379845, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI266458397, Length=258, Percent_Identity=31.0077519379845, Blast_Score=132, Evalue=6e-31,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=34.9315068493151, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=34.9315068493151, Blast_Score=105, Evalue=7e-23,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=42.1652421652422, Blast_Score=301, Evalue=3e-83,
Organism=Escherichia coli, GI1788717, Length=401, Percent_Identity=28.428927680798, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1786222, Length=336, Percent_Identity=24.4047619047619, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=342, Percent_Identity=25.1461988304094, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=354, Percent_Identity=25.4237288135593, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24648431, Length=374, Percent_Identity=44.1176470588235, Blast_Score=323, Evalue=1e-88,
Organism=Drosophila melanogaster, GI24585488, Length=258, Percent_Identity=30.2325581395349, Blast_Score=116, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42092; Mature: 41961

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMSLEGLKILDLTRVLAGPYCTMILADLGAEVIKVEAPGGSDETRDWGPPFQHGVSAYY
CCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHCCCEEE
LCANRNKKSITIDLKSSSGIHYLKELVKESDVIVNNFKSGTMERFGLDYQTLSTLNPSII
EEECCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCEEE
YASITGFGETGPYKDMPGYDFIIQAMSGLMSITGSPESGPQKVGIAITDVLTGLYTCIGI
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCEECCHHHHHHHHHHHHHHH
QAALLERQQSGKGQKIDISLYDTAVSSLVNVASNYLMSGQNPKSLGNNHPNIVPYQTFKT
HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEEEHEECC
EDKDIVIAVGNDAQFKRLCHILQLDDLLNDNRFRTNASRVQHRDILIPLLQESLILQPAD
CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHCCCHH
YWIKALQEEKIPCGPIQTIDKLPKDPQLQSREMFVSMHHQTAGPIKLIGNPLKFSRTPIT
HHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEE
YRHAPPNPGEHNTDYIHLKGD
EECCCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
SMSLEGLKILDLTRVLAGPYCTMILADLGAEVIKVEAPGGSDETRDWGPPFQHGVSAYY
CCCCCCCHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHCCCEEE
LCANRNKKSITIDLKSSSGIHYLKELVKESDVIVNNFKSGTMERFGLDYQTLSTLNPSII
EEECCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCEEE
YASITGFGETGPYKDMPGYDFIIQAMSGLMSITGSPESGPQKVGIAITDVLTGLYTCIGI
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCEECCHHHHHHHHHHHHHHH
QAALLERQQSGKGQKIDISLYDTAVSSLVNVASNYLMSGQNPKSLGNNHPNIVPYQTFKT
HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEEEHEECC
EDKDIVIAVGNDAQFKRLCHILQLDDLLNDNRFRTNASRVQHRDILIPLLQESLILQPAD
CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHCCCHH
YWIKALQEEKIPCGPIQTIDKLPKDPQLQSREMFVSMHHQTAGPIKLIGNPLKFSRTPIT
HHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEE
YRHAPPNPGEHNTDYIHLKGD
EECCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]