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The map label for this gene is yfmR [H]

Identifier: 23098311

GI number: 23098311

Start: 905693

End: 907576

Strand: Direct

Name: yfmR [H]

Synonym: OB0856

Alternate gene names: 23098311

Gene position: 905693-907576 (Clockwise)

Preceding gene: 23098310

Following gene: 23098312

Centisome position: 24.95

GC content: 35.03

Gene sequence:

>1884_bases
ATGTTAATGATAGATAATTTAAGTAAAACATATGGAGATAAAACTTTATTTAACCAAATCACCGCAACCATTGGTGAGAA
GGAACGAATTGGTCTTATAGGAGTAAATGGGACAGGAAAATCAAGTTTTCTTAAAGTAATTGCAGGAATGGATAGTCCGG
ATCAGGGAGATATCAAACATTCCAAAGATTATCATATAGAATATGTAACACAAGAAACGAATTTGCAAGAAGATTTGACG
GTGTTGGATCAGATTTATTATGGTGACGCTTTAATCATGCGAGTGATGAGACAGTATGAGCAGGCATTGTTGGATTTAGA
AAACAGCCCAGAGGATGCAGCTTTACAGCAGAAATTAATTCAAATGCAACAAAAGATGGATGAAGTAGAGGCTTGGGAAG
CTAATACAACAGCGAAAACGATTTTAACTAAATTGGGTATCACTAATTTCACTACTACAGTTGAGAAACTATCAGGTGGC
CAGAAAAAAAGAATAGCTATCGCAAAAGCTTTAATACAGCCGGCAGACTTGTTAATAATGGATGAACCTACGAACCATTT
AGACCATGATACGGTTGAATGGTTAGAAAAATACATGCAATCCTATTCTGGATCTGTTTTACTTGTCACACATGATAGAT
ATTTCTTAAATCGTGTAACAAATCGAATTTTTGAATTAGACAAAGGAAATTTGTATACCTATGCAGGAAATTATGAGTTG
TTTTTAGAGAAGAAAGCGGAAAGAGAGTCTTTAGAGCGCAGTAATGAACAAAAACATCAAAATACGTTAAAACGTGAACT
TGCATGGTTAAAACGTGGTGCGAAGGCTAGGTCAACAAAACAACGAGCTCGTGTAGAACGAGTGGAAGAGATGAAAGACA
AAACATTTGATACGAAGAAAGAAGAAGTTAAATTTCAAGCAGGTTCTAAAAGACTTGGTAATGATGTTATTGAAATTGAT
GGGCTATACAAATCATTTGGAAATCAGACTGTATTGAGTAACTTTTCTCAACTCATTATACCAGAAGATCGAATTGGTAT
TATTGGTAATAACGGTACAGGAAAAACAACGCTTCTAAATATGATGGCAAAACGTACGGAACCAGACCAAGGGTATGTCA
AAATAGGAGAAACGGTGTTAATTGGTTATTATACCCAAGGAGAAGAAGAATTAGATGATCAACAGCGTATTATCGAATAT
ATTAAAGATGTAGCTGAGGTCATCCATACAAAAGGTGGAGAAGTGATTACCGCTGAGCAGATGCTTGAACGATTTTTATT
TGACCGTGCGCAACAATGGTCCTTTATTCGAACATTATCTGGAGGAGAACGCCGTCGACTCTATTTATTAAAAGTATTAA
TGAAAGAGCCAAATGTGCTGTTCTTAGATGAACCTACGAATGATCTTGATACACAGACATTATCCGTCCTAGAAGATTAC
TTGGAACATTTTCCTGGTGTAGTAATAACTGTATCGCATGATCGATACTTTTTAGATAGAGTGGTCAATAAGTTGATTGT
ATTTAAAGGGAATGGCAATACCGATACTTTTTATGGGAATTATACAGAATTTCTTGAAAAGCAAAAGGAAGCAGAGAAAC
TACAACCTACACCTAAAAAACAATCATCTACTAAAACTTCACAGAATGAGAAGAAAAAGAAGTTATCGTATATGGAAAAA
AGAGAATGGGATACGATTGAAGATGAAATTACAAAATTAGAAGAAGAAATTGTAGAAATTGAACAGGCGATCGTTGATGC
TGGAAGTGATTCAGAAAAAGTACAAGAATTATATGCCAATCAACAAGCAGTCGAATTAGCATTAGAGGAAAAAATGGCAC
GATGGGAAGCATTATCTATAAAAGTAGAACAACTTGAAACATGA

Upstream 100 bases:

>100_bases
GGATGTTACTATTATTAGTATTGGTAATAAAAGAATGGTTTCGATTAAAGAAAAGCACTAAAGAAGATAAGGATATTAAC
GAATAAAGAAGGTCTGTACA

Downstream 100 bases:

>100_bases
AGAACCTAAAATCTTCATGTTTTTTGCCGTCAAGCCCCAACGTCTAAAATTAGTCGACTTCACGAAACGCCCTTCAGTAG
CTGGGGCGACATAGGTCGAA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 627; Mature: 627

Protein sequence:

>627_residues
MLMIDNLSKTYGDKTLFNQITATIGEKERIGLIGVNGTGKSSFLKVIAGMDSPDQGDIKHSKDYHIEYVTQETNLQEDLT
VLDQIYYGDALIMRVMRQYEQALLDLENSPEDAALQQKLIQMQQKMDEVEAWEANTTAKTILTKLGITNFTTTVEKLSGG
QKKRIAIAKALIQPADLLIMDEPTNHLDHDTVEWLEKYMQSYSGSVLLVTHDRYFLNRVTNRIFELDKGNLYTYAGNYEL
FLEKKAERESLERSNEQKHQNTLKRELAWLKRGAKARSTKQRARVERVEEMKDKTFDTKKEEVKFQAGSKRLGNDVIEID
GLYKSFGNQTVLSNFSQLIIPEDRIGIIGNNGTGKTTLLNMMAKRTEPDQGYVKIGETVLIGYYTQGEEELDDQQRIIEY
IKDVAEVIHTKGGEVITAEQMLERFLFDRAQQWSFIRTLSGGERRRLYLLKVLMKEPNVLFLDEPTNDLDTQTLSVLEDY
LEHFPGVVITVSHDRYFLDRVVNKLIVFKGNGNTDTFYGNYTEFLEKQKEAEKLQPTPKKQSSTKTSQNEKKKKLSYMEK
REWDTIEDEITKLEEEIVEIEQAIVDAGSDSEKVQELYANQQAVELALEEKMARWEALSIKVEQLET

Sequences:

>Translated_627_residues
MLMIDNLSKTYGDKTLFNQITATIGEKERIGLIGVNGTGKSSFLKVIAGMDSPDQGDIKHSKDYHIEYVTQETNLQEDLT
VLDQIYYGDALIMRVMRQYEQALLDLENSPEDAALQQKLIQMQQKMDEVEAWEANTTAKTILTKLGITNFTTTVEKLSGG
QKKRIAIAKALIQPADLLIMDEPTNHLDHDTVEWLEKYMQSYSGSVLLVTHDRYFLNRVTNRIFELDKGNLYTYAGNYEL
FLEKKAERESLERSNEQKHQNTLKRELAWLKRGAKARSTKQRARVERVEEMKDKTFDTKKEEVKFQAGSKRLGNDVIEID
GLYKSFGNQTVLSNFSQLIIPEDRIGIIGNNGTGKTTLLNMMAKRTEPDQGYVKIGETVLIGYYTQGEEELDDQQRIIEY
IKDVAEVIHTKGGEVITAEQMLERFLFDRAQQWSFIRTLSGGERRRLYLLKVLMKEPNVLFLDEPTNDLDTQTLSVLEDY
LEHFPGVVITVSHDRYFLDRVVNKLIVFKGNGNTDTFYGNYTEFLEKQKEAEKLQPTPKKQSSTKTSQNEKKKKLSYMEK
REWDTIEDEITKLEEEIVEIEQAIVDAGSDSEKVQELYANQQAVELALEEKMARWEALSIKVEQLET
>Mature_627_residues
MLMIDNLSKTYGDKTLFNQITATIGEKERIGLIGVNGTGKSSFLKVIAGMDSPDQGDIKHSKDYHIEYVTQETNLQEDLT
VLDQIYYGDALIMRVMRQYEQALLDLENSPEDAALQQKLIQMQQKMDEVEAWEANTTAKTILTKLGITNFTTTVEKLSGG
QKKRIAIAKALIQPADLLIMDEPTNHLDHDTVEWLEKYMQSYSGSVLLVTHDRYFLNRVTNRIFELDKGNLYTYAGNYEL
FLEKKAERESLERSNEQKHQNTLKRELAWLKRGAKARSTKQRARVERVEEMKDKTFDTKKEEVKFQAGSKRLGNDVIEID
GLYKSFGNQTVLSNFSQLIIPEDRIGIIGNNGTGKTTLLNMMAKRTEPDQGYVKIGETVLIGYYTQGEEELDDQQRIIEY
IKDVAEVIHTKGGEVITAEQMLERFLFDRAQQWSFIRTLSGGERRRLYLLKVLMKEPNVLFLDEPTNDLDTQTLSVLEDY
LEHFPGVVITVSHDRYFLDRVVNKLIVFKGNGNTDTFYGNYTEFLEKQKEAEKLQPTPKKQSSTKTSQNEKKKKLSYMEK
REWDTIEDEITKLEEEIVEIEQAIVDAGSDSEKVQELYANQQAVELALEEKMARWEALSIKVEQLET

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=546, Percent_Identity=28.9377289377289, Blast_Score=216, Evalue=4e-56,
Organism=Homo sapiens, GI10947137, Length=523, Percent_Identity=29.2543021032505, Blast_Score=186, Evalue=8e-47,
Organism=Homo sapiens, GI27881506, Length=523, Percent_Identity=29.2543021032505, Blast_Score=185, Evalue=9e-47,
Organism=Homo sapiens, GI69354671, Length=537, Percent_Identity=27.3743016759777, Blast_Score=159, Evalue=9e-39,
Organism=Homo sapiens, GI10947135, Length=537, Percent_Identity=27.3743016759777, Blast_Score=159, Evalue=9e-39,
Organism=Escherichia coli, GI2367384, Length=531, Percent_Identity=33.5216572504708, Blast_Score=337, Evalue=1e-93,
Organism=Escherichia coli, GI1787182, Length=625, Percent_Identity=30.4, Blast_Score=301, Evalue=8e-83,
Organism=Escherichia coli, GI1789751, Length=659, Percent_Identity=28.8315629742033, Blast_Score=271, Evalue=8e-74,
Organism=Escherichia coli, GI1787041, Length=537, Percent_Identity=30.7262569832402, Blast_Score=268, Evalue=7e-73,
Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=26.6393442622951, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1789672, Length=252, Percent_Identity=26.984126984127, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788225, Length=268, Percent_Identity=24.6268656716418, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI87081709, Length=244, Percent_Identity=25.8196721311475, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787164, Length=235, Percent_Identity=25.531914893617, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1790525, Length=547, Percent_Identity=21.5722120658135, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1786803, Length=249, Percent_Identity=26.5060240963855, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786398, Length=256, Percent_Identity=23.4375, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787089, Length=250, Percent_Identity=22.8, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=545, Percent_Identity=27.8899082568807, Blast_Score=204, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17555318, Length=549, Percent_Identity=29.5081967213115, Blast_Score=188, Evalue=9e-48,
Organism=Caenorhabditis elegans, GI17553372, Length=528, Percent_Identity=28.9772727272727, Blast_Score=179, Evalue=4e-45,
Organism=Caenorhabditis elegans, GI17555800, Length=506, Percent_Identity=23.7154150197628, Blast_Score=99, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI71983523, Length=244, Percent_Identity=27.4590163934426, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=244, Percent_Identity=27.4590163934426, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=244, Percent_Identity=27.4590163934426, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17565938, Length=246, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=529, Percent_Identity=29.3005671077505, Blast_Score=197, Evalue=6e-51,
Organism=Saccharomyces cerevisiae, GI6321121, Length=571, Percent_Identity=29.5971978984238, Blast_Score=192, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6324314, Length=391, Percent_Identity=26.8542199488491, Blast_Score=116, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=382, Percent_Identity=26.9633507853403, Blast_Score=110, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6325030, Length=235, Percent_Identity=30.2127659574468, Blast_Score=107, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24666836, Length=534, Percent_Identity=29.4007490636704, Blast_Score=205, Evalue=6e-53,
Organism=Drosophila melanogaster, GI24642252, Length=517, Percent_Identity=29.5938104448743, Blast_Score=189, Evalue=7e-48,
Organism=Drosophila melanogaster, GI18859989, Length=517, Percent_Identity=29.5938104448743, Blast_Score=189, Evalue=7e-48,
Organism=Drosophila melanogaster, GI24641342, Length=521, Percent_Identity=28.2149712092131, Blast_Score=184, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 72174; Mature: 72174

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMIDNLSKTYGDKTLFNQITATIGEKERIGLIGVNGTGKSSFLKVIAGMDSPDQGDIKH
CEEECCCHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCC
SKDYHIEYVTQETNLQEDLTVLDQIYYGDALIMRVMRQYEQALLDLENSPEDAALQQKLI
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
QMQQKMDEVEAWEANTTAKTILTKLGITNFTTTVEKLSGGQKKRIAIAKALIQPADLLIM
HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEE
DEPTNHLDHDTVEWLEKYMQSYSGSVLLVTHDRYFLNRVTNRIFELDKGNLYTYAGNYEL
CCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCEEE
FLEKKAERESLERSNEQKHQNTLKRELAWLKRGAKARSTKQRARVERVEEMKDKTFDTKK
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
EEVKFQAGSKRLGNDVIEIDGLYKSFGNQTVLSNFSQLIIPEDRIGIIGNNGTGKTTLLN
HHHHHHCCCHHHCCCCEEECHHHHHHCCHHHHHCCHHHCCCCCCEEEEECCCCCHHHHHH
MMAKRTEPDQGYVKIGETVLIGYYTQGEEELDDQQRIIEYIKDVAEVIHTKGGEVITAEQ
HHHHCCCCCCCEEEECCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH
MLERFLFDRAQQWSFIRTLSGGERRRLYLLKVLMKEPNVLFLDEPTNDLDTQTLSVLEDY
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
LEHFPGVVITVSHDRYFLDRVVNKLIVFKGNGNTDTFYGNYTEFLEKQKEAEKLQPTPKK
HHHCCCEEEEECCCHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
QSSTKTSQNEKKKKLSYMEKREWDTIEDEITKLEEEIVEIEQAIVDAGSDSEKVQELYAN
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
QQAVELALEEKMARWEALSIKVEQLET
HHHHHHHHHHHHHHHHHHEEEHHHCCC
>Mature Secondary Structure
MLMIDNLSKTYGDKTLFNQITATIGEKERIGLIGVNGTGKSSFLKVIAGMDSPDQGDIKH
CEEECCCHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCC
SKDYHIEYVTQETNLQEDLTVLDQIYYGDALIMRVMRQYEQALLDLENSPEDAALQQKLI
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
QMQQKMDEVEAWEANTTAKTILTKLGITNFTTTVEKLSGGQKKRIAIAKALIQPADLLIM
HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEE
DEPTNHLDHDTVEWLEKYMQSYSGSVLLVTHDRYFLNRVTNRIFELDKGNLYTYAGNYEL
CCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCEEE
FLEKKAERESLERSNEQKHQNTLKRELAWLKRGAKARSTKQRARVERVEEMKDKTFDTKK
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
EEVKFQAGSKRLGNDVIEIDGLYKSFGNQTVLSNFSQLIIPEDRIGIIGNNGTGKTTLLN
HHHHHHCCCHHHCCCCEEECHHHHHHCCHHHHHCCHHHCCCCCCEEEEECCCCCHHHHHH
MMAKRTEPDQGYVKIGETVLIGYYTQGEEELDDQQRIIEYIKDVAEVIHTKGGEVITAEQ
HHHHCCCCCCCEEEECCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH
MLERFLFDRAQQWSFIRTLSGGERRRLYLLKVLMKEPNVLFLDEPTNDLDTQTLSVLEDY
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
LEHFPGVVITVSHDRYFLDRVVNKLIVFKGNGNTDTFYGNYTEFLEKQKEAEKLQPTPKK
HHHCCCEEEEECCCHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
QSSTKTSQNEKKKKLSYMEKREWDTIEDEITKLEEEIVEIEQAIVDAGSDSEKVQELYAN
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
QQAVELALEEKMARWEALSIKVEQLET
HHHHHHHHHHHHHHHHHHEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]