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The map label for this gene is degU [H]

Identifier: 23098290

GI number: 23098290

Start: 887207

End: 887830

Strand: Reverse

Name: degU [H]

Synonym: OB0835

Alternate gene names: 23098290

Gene position: 887830-887207 (Counterclockwise)

Preceding gene: 23098291

Following gene: 23098277

Centisome position: 24.45

GC content: 34.46

Gene sequence:

>624_bases
ATGAGTATGGCACCTACTACAAATGGACAAGCTTACCATTTTAATTCTTCAACATTAACTCAAATAACGAATTTAGCTAT
ATATGTTAAAACCCCAGTTGAATTATTTCATATGACAGAAGAAGAGCTTAAAAAAACCGACTTTTTAATCGTATTGATTA
AAGACCATAAAGATAGTGAACAACTGATTAAAGAATATAACCCACTTCCTACATCTGTTGCTATTGTCATTTCGGATATT
GATATGGCTCACGTAACACGATTGTTTGAAATGGAATTTGACGGATACTTTTACCATTCCATGTTGGAAAAGGATATCAT
ATCTGGCATTGAATTTATTAAGAACGGGTATACCTACGTATATCCTGAACTTGCAAAACTTCTCCATGAAGAATATGTCC
GTATCGCCAATACTCTACAAGCACGACCAGAAGGCTTACTCACAGACAGAGAATGGGACATATTAATTGAAATTGCAAAA
GGTAATAACAACGACCAGATCGCTTTAAATCTAGAAATATCAGATAAGACAGTTAAAAATCACGTTACTACGATTCTTCG
TAAACTGGATGTAAACGACCGTACGAATGCTATGCTGTTAGCATTTCGCAAAGGATGGATATAA

Upstream 100 bases:

>100_bases
TAAAATTATTCAAGTCAATGGAATTTTTATACAACTTTTTTTATATTTACGACATATGGAAAAGACCAATTACTCAAATC
AAAGATAGGAGCTGATCATA

Downstream 100 bases:

>100_bases
ATTTTTTAAAAAGGTTCAGAGCTCATAACAGCTCTGAACCTTCTTTTTTTAAAGTGATGCTTTGATTACTTTTTTATAAT
AAGAGATAGATAATATTCCA

Product: transcriptional regulator

Products: NA

Alternate protein names: Protease production enhancer protein [H]

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSMAPTTNGQAYHFNSSTLTQITNLAIYVKTPVELFHMTEEELKKTDFLIVLIKDHKDSEQLIKEYNPLPTSVAIVISDI
DMAHVTRLFEMEFDGYFYHSMLEKDIISGIEFIKNGYTYVYPELAKLLHEEYVRIANTLQARPEGLLTDREWDILIEIAK
GNNNDQIALNLEISDKTVKNHVTTILRKLDVNDRTNAMLLAFRKGWI

Sequences:

>Translated_207_residues
MSMAPTTNGQAYHFNSSTLTQITNLAIYVKTPVELFHMTEEELKKTDFLIVLIKDHKDSEQLIKEYNPLPTSVAIVISDI
DMAHVTRLFEMEFDGYFYHSMLEKDIISGIEFIKNGYTYVYPELAKLLHEEYVRIANTLQARPEGLLTDREWDILIEIAK
GNNNDQIALNLEISDKTVKNHVTTILRKLDVNDRTNAMLLAFRKGWI
>Mature_206_residues
SMAPTTNGQAYHFNSSTLTQITNLAIYVKTPVELFHMTEEELKKTDFLIVLIKDHKDSEQLIKEYNPLPTSVAIVISDID
MAHVTRLFEMEFDGYFYHSMLEKDIISGIEFIKNGYTYVYPELAKLLHEEYVRIANTLQARPEGLLTDREWDILIEIAKG
NNNDQIALNLEISDKTVKNHVTTILRKLDVNDRTNAMLLAFRKGWI

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23912; Mature: 23781

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMAPTTNGQAYHFNSSTLTQITNLAIYVKTPVELFHMTEEELKKTDFLIVLIKDHKDSE
CCCCCCCCCCEEEECCHHHHHHHEEEEEEECCHHHHHCCHHHHCCCCEEEEEEECCCCHH
QLIKEYNPLPTSVAIVISDIDMAHVTRLFEMEFDGYFYHSMLEKDIISGIEFIKNGYTYV
HHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
YPELAKLLHEEYVRIANTLQARPEGLLTDREWDILIEIAKGNNNDQIALNLEISDKTVKN
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCHHHHH
HVTTILRKLDVNDRTNAMLLAFRKGWI
HHHHHHHHCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
SMAPTTNGQAYHFNSSTLTQITNLAIYVKTPVELFHMTEEELKKTDFLIVLIKDHKDSE
CCCCCCCCCEEEECCHHHHHHHEEEEEEECCHHHHHCCHHHHCCCCEEEEEEECCCCHH
QLIKEYNPLPTSVAIVISDIDMAHVTRLFEMEFDGYFYHSMLEKDIISGIEFIKNGYTYV
HHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
YPELAKLLHEEYVRIANTLQARPEGLLTDREWDILIEIAKGNNNDQIALNLEISDKTVKN
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCHHHHH
HVTTILRKLDVNDRTNAMLLAFRKGWI
HHHHHHHHCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3136143; 3141378; 3141377; 9384377 [H]