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The map label for this gene is ykoC [H]

Identifier: 23098258

GI number: 23098258

Start: 857396

End: 858181

Strand: Reverse

Name: ykoC [H]

Synonym: OB0803

Alternate gene names: 23098258

Gene position: 858181-857396 (Counterclockwise)

Preceding gene: 23098259

Following gene: 23098248

Centisome position: 23.64

GC content: 35.62

Gene sequence:

>786_bases
ATGATTGAGAATAGAAATCCTAGCATGAAAGCTCTGGCAGTTTTAATTCCTGGAATATTTCTTAGTTTTTCTTTCGATAT
GATTACACCCTTCATCTATTTATTGTATATCTTAGCAATAACATTTATCCTAGCAAGCGTCCCATTGAAGAAATGGTTCC
TGATTTTCATGCCACTTTCGTTGTTTGCTACATCACTCGCTTGGATGACAATGCTTTACACCGATGAATCCTACGCAACT
GGAGACGTTATTTTTACATTTCTTTGGTTTGAAGTGACGACAGGTAGTGCTGAAGTCGGAATAAGCCTTGCTTTACGTTC
CTTATGTTTTATAGCATTATCCTTATTATTTGTATTCACGACAAATCCAACAAAATTTATGTTAAGTTTAATGCAACAAT
GTAAGTTATCTCCAAAATTAACCTATGGTATTTTAGCTGGTTATCGCTTTTTGCCAATGTTACAACATGAATTTGAATTA
CTGAAACAAGCGCATCGTATCCGAGGAATCAGCAGAGCAGAAGGGTGGCAGAACCGGCTACAAAATATGAAACAATATGC
TATTCCTTTGCTAGCAAATTCGATAAGAAAAGCCGAACGAGTTGCAATAGCAATGGAATCCAAAGGCTTTACTGGAGAAC
GCGAGCGTACGTACTATCATCGAATGAAGGTTAATAGAAAAGATTGGATATTCCTTTTTGGAATGATTTTTGCATTAATC
ATTGCTTATTACACGTCGTATCAACTAGGTTATTTGAATATATTTGGAAATGAGATTGGGAAATAG

Upstream 100 bases:

>100_bases
CACAATCGCTTTGGAATCAGAAAGAGTTATTACAAGATACTAGATTAAGAGAACCTTATCGTGTTCGAGAATCTGTTAAA
CGAGAAGTGGTGCATATGCA

Downstream 100 bases:

>100_bases
GTGTTTTAACAAAAAGGCTCATCCGAATAAACACTTTTGCTGAATCCATAACGAAATGTACTTGCTTATCCAGCGAATAG
GTGATACCGCTGATACTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MIENRNPSMKALAVLIPGIFLSFSFDMITPFIYLLYILAITFILASVPLKKWFLIFMPLSLFATSLAWMTMLYTDESYAT
GDVIFTFLWFEVTTGSAEVGISLALRSLCFIALSLLFVFTTNPTKFMLSLMQQCKLSPKLTYGILAGYRFLPMLQHEFEL
LKQAHRIRGISRAEGWQNRLQNMKQYAIPLLANSIRKAERVAIAMESKGFTGERERTYYHRMKVNRKDWIFLFGMIFALI
IAYYTSYQLGYLNIFGNEIGK

Sequences:

>Translated_261_residues
MIENRNPSMKALAVLIPGIFLSFSFDMITPFIYLLYILAITFILASVPLKKWFLIFMPLSLFATSLAWMTMLYTDESYAT
GDVIFTFLWFEVTTGSAEVGISLALRSLCFIALSLLFVFTTNPTKFMLSLMQQCKLSPKLTYGILAGYRFLPMLQHEFEL
LKQAHRIRGISRAEGWQNRLQNMKQYAIPLLANSIRKAERVAIAMESKGFTGERERTYYHRMKVNRKDWIFLFGMIFALI
IAYYTSYQLGYLNIFGNEIGK
>Mature_261_residues
MIENRNPSMKALAVLIPGIFLSFSFDMITPFIYLLYILAITFILASVPLKKWFLIFMPLSLFATSLAWMTMLYTDESYAT
GDVIFTFLWFEVTTGSAEVGISLALRSLCFIALSLLFVFTTNPTKFMLSLMQQCKLSPKLTYGILAGYRFLPMLQHEFEL
LKQAHRIRGISRAEGWQNRLQNMKQYAIPLLANSIRKAERVAIAMESKGFTGERERTYYHRMKVNRKDWIFLFGMIFALI
IAYYTSYQLGYLNIFGNEIGK

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30165; Mature: 30165

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENRNPSMKALAVLIPGIFLSFSFDMITPFIYLLYILAITFILASVPLKKWFLIFMPLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LFATSLAWMTMLYTDESYATGDVIFTFLWFEVTTGSAEVGISLALRSLCFIALSLLFVFT
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHC
TNPTKFMLSLMQQCKLSPKLTYGILAGYRFLPMLQHEFELLKQAHRIRGISRAEGWQNRL
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QNMKQYAIPLLANSIRKAERVAIAMESKGFTGERERTYYHRMKVNRKDWIFLFGMIFALI
HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
IAYYTSYQLGYLNIFGNEIGK
HHHHHHHCCHHHEECCHHHCC
>Mature Secondary Structure
MIENRNPSMKALAVLIPGIFLSFSFDMITPFIYLLYILAITFILASVPLKKWFLIFMPLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LFATSLAWMTMLYTDESYATGDVIFTFLWFEVTTGSAEVGISLALRSLCFIALSLLFVFT
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHC
TNPTKFMLSLMQQCKLSPKLTYGILAGYRFLPMLQHEFELLKQAHRIRGISRAEGWQNRL
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QNMKQYAIPLLANSIRKAERVAIAMESKGFTGERERTYYHRMKVNRKDWIFLFGMIFALI
HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
IAYYTSYQLGYLNIFGNEIGK
HHHHHHHCCHHHEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]