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The map label for this gene is ydiF [H]

Identifier: 23098106

GI number: 23098106

Start: 685901

End: 687832

Strand: Reverse

Name: ydiF [H]

Synonym: OB0651

Alternate gene names: 23098106

Gene position: 687832-685901 (Counterclockwise)

Preceding gene: 23098108

Following gene: 23098105

Centisome position: 18.95

GC content: 36.02

Gene sequence:

>1932_bases
ATGATACTGATGCAATTAAACGGAATATCAAAATCTTTTGGCGCAGAAGAGATTTTGTCTAATATAAAAGTAGAAATTAA
AGACCAAGATCGTATTGCCATCGTCGGTAGAAATGGTGCAGGAAAATCGACACTGCTAAAAATAATGGCAAATGAACTCC
CTCATGATGAAGGAGAGTTTTTCAAACCGAAAGATCTTACCTATGGTTATCTATCGCAACATATGAAGTTAGAATCAGGT
AAAACCATTTGGAATGAGATGGAAGATGTATTTTCCCATTTAAAACAGATGGAAAAAAAGTTACGTGAAGTAGAAATTAA
AATGGCAGATCCTACTGCAGTAGATGAAACGAGTTACCAAGCCATTCTGAAAGAATACGATGAATTACAAATTCGCTATC
AATCAGATGGTGGTTATACGTATGAATCGGATATAAAATCGGTACTTACTGGTCTCTCATTTGGTGATTATGATTATGAA
ACGCCGATTAACGAATTAAGTGGCGGACAAAAGACAAGACTCGCTCTTGGTAAATTATTGCTACAAAAACCTCAGTTACT
CATCCTCGATGAGCCTACAAACCATCTCGATATTGATACACTAACATGGTTGGAAGGTTATCTCGTTAATTATCCTGGTG
CAATTGTGATTGTTTCCCATGACCGCTATTTTCTTGATAAAACGGTATCTATCGTTTATGAAATTTCTAGACATCATTCG
AGAAAATATCATGGTACCTATAGTAAATACCTGGAACAAAAAGCACTTGATTACGAACAAGAAATGAAAGAATACGTAAA
ACAACAAACGGATATTAAACGGATGGAAGAATTCATTCAAAAGAATATCGTCCGTGCTTCCACTACAAAACGAGCACAAA
GTAGACGAAAGCAATTAGAAAAAATGGACAAGATGGATCGTCCAATGGGTGATGAATCATCCGCTTCGATGTCATTTCAA
ATTAATCGTCGTAGTGGCAATGATGTATTAAAAATTTCTAATCTAGGCTTCCGATATGAAGAACAACAAGAACCTACATT
CCGCCATGTAAACCTTCATGCAAATCGCGGTGAACGTATCGCATTAGTTGGTCCGAATGGAATCGGAAAAACAACGTTAC
TGAAGACCATTGTGGAGAAAGAATTTCCTTTTGACGGAGACATCCAATTAGGAACAAATGTACAAGTCGGGTACTATGAT
CAGGAACAAACCGAACTTCACTCGAACAAAACCGTCCTTCAAGAATTGTGGGATGAGTATCCTCTAGTGAATGAAAAAGA
TATTCGTACGATACTAGGCAATTTCTTATTCTCTGGGGATGATGTATTAAAAGTCGTTTCTGCATTAAGTGGTGGTGAAA
AATCACGCTTAGCTTTATCTAAATTAAAAATGCAAAAAGCAAACCTACTTATTCTAGATGAACCAACGAACCACTTAGAT
ATTGATAGTAAAGAAGTGTTAGAAGGTGCATTAGCTGATTTCCCGGGTACAATTATCTTTGTTTCACATGATCGCTATTT
TATTAATCGAATCGCAGATCAAGTAGCCGAAATGAATCCACAAGGAATTAAAATGTACCTTGGTGACTATGATTATTATC
TAGAGAAAAAAGCAGAAGAAGCAGAACTTGCTCGTCTTCAGATGGAGAAAGAAGTACAATCAACAACGGTTTCCGATAAA
AAAAGAAGTTTTAAAGAAGAAAAGCAGAAACAAAGTGAAGAAAGAAAACGGAAAAGACAAATCGCTGAACTTGAAAAACA
GATCGAAACGACAGAAGAGCATATTGCACATTTAGAAGAACAAATGACATTACCAGAAGTATATGAAGATCACGAAAAAG
CATTAGAGTTAACCGAAGAAACCAACATGTACAAACAAAAACTTGATGATCTATTGGAGCATTGGACAAGCCTAGAAGAG
TTAGACAATTGA

Upstream 100 bases:

>100_bases
TATTTTAACAGATTATTCCTTAGAAGTCGTGACATTTTTCACAATAATATTGTCGCTTCTTTGGCGATAAGCTAAACTAG
TATTATGAGGTGACAATGAA

Downstream 100 bases:

>100_bases
AAAAATATTCATCTTCATTTATAATATTTACAGGTAAGTATATACTTGCCTGTTTTTATATATACAGCTTGTTTCGTTTG
TTTGCTAATAATAAATCATG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MILMQLNGISKSFGAEEILSNIKVEIKDQDRIAIVGRNGAGKSTLLKIMANELPHDEGEFFKPKDLTYGYLSQHMKLESG
KTIWNEMEDVFSHLKQMEKKLREVEIKMADPTAVDETSYQAILKEYDELQIRYQSDGGYTYESDIKSVLTGLSFGDYDYE
TPINELSGGQKTRLALGKLLLQKPQLLILDEPTNHLDIDTLTWLEGYLVNYPGAIVIVSHDRYFLDKTVSIVYEISRHHS
RKYHGTYSKYLEQKALDYEQEMKEYVKQQTDIKRMEEFIQKNIVRASTTKRAQSRRKQLEKMDKMDRPMGDESSASMSFQ
INRRSGNDVLKISNLGFRYEEQQEPTFRHVNLHANRGERIALVGPNGIGKTTLLKTIVEKEFPFDGDIQLGTNVQVGYYD
QEQTELHSNKTVLQELWDEYPLVNEKDIRTILGNFLFSGDDVLKVVSALSGGEKSRLALSKLKMQKANLLILDEPTNHLD
IDSKEVLEGALADFPGTIIFVSHDRYFINRIADQVAEMNPQGIKMYLGDYDYYLEKKAEEAELARLQMEKEVQSTTVSDK
KRSFKEEKQKQSEERKRKRQIAELEKQIETTEEHIAHLEEQMTLPEVYEDHEKALELTEETNMYKQKLDDLLEHWTSLEE
LDN

Sequences:

>Translated_643_residues
MILMQLNGISKSFGAEEILSNIKVEIKDQDRIAIVGRNGAGKSTLLKIMANELPHDEGEFFKPKDLTYGYLSQHMKLESG
KTIWNEMEDVFSHLKQMEKKLREVEIKMADPTAVDETSYQAILKEYDELQIRYQSDGGYTYESDIKSVLTGLSFGDYDYE
TPINELSGGQKTRLALGKLLLQKPQLLILDEPTNHLDIDTLTWLEGYLVNYPGAIVIVSHDRYFLDKTVSIVYEISRHHS
RKYHGTYSKYLEQKALDYEQEMKEYVKQQTDIKRMEEFIQKNIVRASTTKRAQSRRKQLEKMDKMDRPMGDESSASMSFQ
INRRSGNDVLKISNLGFRYEEQQEPTFRHVNLHANRGERIALVGPNGIGKTTLLKTIVEKEFPFDGDIQLGTNVQVGYYD
QEQTELHSNKTVLQELWDEYPLVNEKDIRTILGNFLFSGDDVLKVVSALSGGEKSRLALSKLKMQKANLLILDEPTNHLD
IDSKEVLEGALADFPGTIIFVSHDRYFINRIADQVAEMNPQGIKMYLGDYDYYLEKKAEEAELARLQMEKEVQSTTVSDK
KRSFKEEKQKQSEERKRKRQIAELEKQIETTEEHIAHLEEQMTLPEVYEDHEKALELTEETNMYKQKLDDLLEHWTSLEE
LDN
>Mature_643_residues
MILMQLNGISKSFGAEEILSNIKVEIKDQDRIAIVGRNGAGKSTLLKIMANELPHDEGEFFKPKDLTYGYLSQHMKLESG
KTIWNEMEDVFSHLKQMEKKLREVEIKMADPTAVDETSYQAILKEYDELQIRYQSDGGYTYESDIKSVLTGLSFGDYDYE
TPINELSGGQKTRLALGKLLLQKPQLLILDEPTNHLDIDTLTWLEGYLVNYPGAIVIVSHDRYFLDKTVSIVYEISRHHS
RKYHGTYSKYLEQKALDYEQEMKEYVKQQTDIKRMEEFIQKNIVRASTTKRAQSRRKQLEKMDKMDRPMGDESSASMSFQ
INRRSGNDVLKISNLGFRYEEQQEPTFRHVNLHANRGERIALVGPNGIGKTTLLKTIVEKEFPFDGDIQLGTNVQVGYYD
QEQTELHSNKTVLQELWDEYPLVNEKDIRTILGNFLFSGDDVLKVVSALSGGEKSRLALSKLKMQKANLLILDEPTNHLD
IDSKEVLEGALADFPGTIIFVSHDRYFINRIADQVAEMNPQGIKMYLGDYDYYLEKKAEEAELARLQMEKEVQSTTVSDK
KRSFKEEKQKQSEERKRKRQIAELEKQIETTEEHIAHLEEQMTLPEVYEDHEKALELTEETNMYKQKLDDLLEHWTSLEE
LDN

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=528, Percent_Identity=32.1969696969697, Blast_Score=250, Evalue=4e-66,
Organism=Homo sapiens, GI10947137, Length=532, Percent_Identity=29.6992481203008, Blast_Score=229, Evalue=4e-60,
Organism=Homo sapiens, GI27881506, Length=532, Percent_Identity=29.6992481203008, Blast_Score=229, Evalue=5e-60,
Organism=Homo sapiens, GI69354671, Length=547, Percent_Identity=28.5191956124314, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI10947135, Length=547, Percent_Identity=28.5191956124314, Blast_Score=197, Evalue=2e-50,
Organism=Escherichia coli, GI1789751, Length=610, Percent_Identity=31.8032786885246, Blast_Score=304, Evalue=1e-83,
Organism=Escherichia coli, GI2367384, Length=525, Percent_Identity=33.9047619047619, Blast_Score=291, Evalue=8e-80,
Organism=Escherichia coli, GI1787041, Length=537, Percent_Identity=32.4022346368715, Blast_Score=291, Evalue=1e-79,
Organism=Escherichia coli, GI1787182, Length=658, Percent_Identity=31.1550151975684, Blast_Score=274, Evalue=1e-74,
Organism=Escherichia coli, GI1788165, Length=174, Percent_Identity=25.8620689655172, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789672, Length=243, Percent_Identity=27.1604938271605, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=540, Percent_Identity=32.037037037037, Blast_Score=243, Evalue=3e-64,
Organism=Caenorhabditis elegans, GI17555318, Length=556, Percent_Identity=29.6762589928058, Blast_Score=241, Evalue=1e-63,
Organism=Caenorhabditis elegans, GI17559834, Length=526, Percent_Identity=30.0380228136882, Blast_Score=218, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI71996809, Length=179, Percent_Identity=29.608938547486, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=179, Percent_Identity=29.608938547486, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=179, Percent_Identity=29.608938547486, Blast_Score=65, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6320874, Length=518, Percent_Identity=30.5019305019305, Blast_Score=234, Evalue=5e-62,
Organism=Saccharomyces cerevisiae, GI6321121, Length=557, Percent_Identity=30.1615798922801, Blast_Score=233, Evalue=5e-62,
Organism=Saccharomyces cerevisiae, GI6325030, Length=424, Percent_Identity=26.1792452830189, Blast_Score=130, Evalue=6e-31,
Organism=Saccharomyces cerevisiae, GI6323278, Length=407, Percent_Identity=24.8157248157248, Blast_Score=125, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6324314, Length=405, Percent_Identity=25.679012345679, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24666836, Length=526, Percent_Identity=33.6501901140684, Blast_Score=268, Evalue=1e-71,
Organism=Drosophila melanogaster, GI24642252, Length=545, Percent_Identity=28.6238532110092, Blast_Score=229, Evalue=5e-60,
Organism=Drosophila melanogaster, GI18859989, Length=545, Percent_Identity=28.6238532110092, Blast_Score=229, Evalue=5e-60,
Organism=Drosophila melanogaster, GI24641342, Length=542, Percent_Identity=29.3357933579336, Blast_Score=221, Evalue=1e-57,
Organism=Drosophila melanogaster, GI28574259, Length=304, Percent_Identity=22.3684210526316, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 74453; Mature: 74453

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILMQLNGISKSFGAEEILSNIKVEIKDQDRIAIVGRNGAGKSTLLKIMANELPHDEGEF
CEEEEECCCCHHCCHHHHHHCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
FKPKDLTYGYLSQHMKLESGKTIWNEMEDVFSHLKQMEKKLREVEIKMADPTAVDETSYQ
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHH
AILKEYDELQIRYQSDGGYTYESDIKSVLTGLSFGDYDYETPINELSGGQKTRLALGKLL
HHHHHHHHEEEEEECCCCEEEHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHHHH
LQKPQLLILDEPTNHLDIDTLTWLEGYLVNYPGAIVIVSHDRYFLDKTVSIVYEISRHHS
HCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC
RKYHGTYSKYLEQKALDYEQEMKEYVKQQTDIKRMEEFIQKNIVRASTTKRAQSRRKQLE
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMDKMDRPMGDESSASMSFQINRRSGNDVLKISNLGFRYEEQQEPTFRHVNLHANRGERI
HHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEE
ALVGPNGIGKTTLLKTIVEKEFPFDGDIQLGTNVQVGYYDQEQTELHSNKTVLQELWDEY
EEECCCCCCHHHHHHHHHHHCCCCCCCEEECCEEEEEECCCHHHHHHCCHHHHHHHHHHC
PLVNEKDIRTILGNFLFSGDDVLKVVSALSGGEKSRLALSKLKMQKANLLILDEPTNHLD
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCCCC
IDSKEVLEGALADFPGTIIFVSHDRYFINRIADQVAEMNPQGIKMYLGDYDYYLEKKAEE
CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCHH
AELARLQMEKEVQSTTVSDKKRSFKEEKQKQSEERKRKRQIAELEKQIETTEEHIAHLEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMTLPEVYEDHEKALELTEETNMYKQKLDDLLEHWTSLEELDN
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILMQLNGISKSFGAEEILSNIKVEIKDQDRIAIVGRNGAGKSTLLKIMANELPHDEGEF
CEEEEECCCCHHCCHHHHHHCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
FKPKDLTYGYLSQHMKLESGKTIWNEMEDVFSHLKQMEKKLREVEIKMADPTAVDETSYQ
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHH
AILKEYDELQIRYQSDGGYTYESDIKSVLTGLSFGDYDYETPINELSGGQKTRLALGKLL
HHHHHHHHEEEEEECCCCEEEHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHHHH
LQKPQLLILDEPTNHLDIDTLTWLEGYLVNYPGAIVIVSHDRYFLDKTVSIVYEISRHHS
HCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC
RKYHGTYSKYLEQKALDYEQEMKEYVKQQTDIKRMEEFIQKNIVRASTTKRAQSRRKQLE
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMDKMDRPMGDESSASMSFQINRRSGNDVLKISNLGFRYEEQQEPTFRHVNLHANRGERI
HHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEE
ALVGPNGIGKTTLLKTIVEKEFPFDGDIQLGTNVQVGYYDQEQTELHSNKTVLQELWDEY
EEECCCCCCHHHHHHHHHHHCCCCCCCEEECCEEEEEECCCHHHHHHCCHHHHHHHHHHC
PLVNEKDIRTILGNFLFSGDDVLKVVSALSGGEKSRLALSKLKMQKANLLILDEPTNHLD
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCCCC
IDSKEVLEGALADFPGTIIFVSHDRYFINRIADQVAEMNPQGIKMYLGDYDYYLEKKAEE
CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCHH
AELARLQMEKEVQSTTVSDKKRSFKEEKQKQSEERKRKRQIAELEKQIETTEEHIAHLEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMTLPEVYEDHEKALELTEETNMYKQKLDDLLEHWTSLEELDN
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]