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The map label for this gene is ydiC [H]

Identifier: 23098101

GI number: 23098101

Start: 681293

End: 682000

Strand: Direct

Name: ydiC [H]

Synonym: OB0646

Alternate gene names: 23098101

Gene position: 681293-682000 (Clockwise)

Preceding gene: 23098100

Following gene: 23098102

Centisome position: 18.77

GC content: 36.58

Gene sequence:

>708_bases
ATGAATATACTTGCAATCGATACTTCCAATCAAGTATTAGGTGTGTCATTATTAAACAATGGAGAGATACTAGCTGAACT
TACAACTAATATCAAGAAGAATCATTCTGTTCGTTTAATGCCTGCTGTAGAAAGTCTTATGCAACAGGTATCTATGCAAC
CGGAAGAACTTGATCGAATTGTAGTAGCAAAAGGGCCTGGCTCTTACACGGGAGTAAGAATTGGCCTATCTACAGCAAAG
ACAATGGCATGGGCTTTAGAAATACCAGTAGTAGGAGTCTCTAGCTTAGAGGTACTTGCTTATCAAGGGAAGTTCTTTAG
TGGAATTATATGTCCTTTCTTTGATGCGAGGAGAGGATTAGTATTTACTGGTGGATATCAATTTAACGATAATAAAATTG
AAAAAGTGATTGAAGAAGAAAATTTACTTATGACCTCCATGCTGGATAAATTAAAAAAGCAGGGGGAAAAGGTAGTATTC
TTGAGTCCGGATATTGAACAATTTAAAGAATTAATTAAAGAGGAACTAGGAGATTTAGCAATTATTCCTGAACCTATCTA
TCATCTTCCAAAAGCTTCGCACTTAGGGCTTGTAGGGATGAATTTAGAACCGGAAGCTATTCATGAGCTCGTTCCTAATT
ATCTACGTTTAGCAGAAGCAGAAGCGAATTGGCAAAAGAGTCAGAAGGAACGTCAAGTAAATGAATAA

Upstream 100 bases:

>100_bases
CATTATACGGAAAATAAAGATATGCGTGTAATTGATTTGAAACCTCATGGGTCTCACTTTGAACAAGTAGTAAATGAATT
AAAAGGTTAGGAGTTAATGT

Downstream 100 bases:

>100_bases
TATAACGATGCGTCCAATGGAACTTGCTGATATACCTGAAGTTTTACATGTAGAAAATGCATGTTTTCAAACACCTTGGA
CAACGGATATTTTTTATCAA

Product: glycoprotein endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNILAIDTSNQVLGVSLLNNGEILAELTTNIKKNHSVRLMPAVESLMQQVSMQPEELDRIVVAKGPGSYTGVRIGLSTAK
TMAWALEIPVVGVSSLEVLAYQGKFFSGIICPFFDARRGLVFTGGYQFNDNKIEKVIEEENLLMTSMLDKLKKQGEKVVF
LSPDIEQFKELIKEELGDLAIIPEPIYHLPKASHLGLVGMNLEPEAIHELVPNYLRLAEAEANWQKSQKERQVNE

Sequences:

>Translated_235_residues
MNILAIDTSNQVLGVSLLNNGEILAELTTNIKKNHSVRLMPAVESLMQQVSMQPEELDRIVVAKGPGSYTGVRIGLSTAK
TMAWALEIPVVGVSSLEVLAYQGKFFSGIICPFFDARRGLVFTGGYQFNDNKIEKVIEEENLLMTSMLDKLKKQGEKVVF
LSPDIEQFKELIKEELGDLAIIPEPIYHLPKASHLGLVGMNLEPEAIHELVPNYLRLAEAEANWQKSQKERQVNE
>Mature_235_residues
MNILAIDTSNQVLGVSLLNNGEILAELTTNIKKNHSVRLMPAVESLMQQVSMQPEELDRIVVAKGPGSYTGVRIGLSTAK
TMAWALEIPVVGVSSLEVLAYQGKFFSGIICPFFDARRGLVFTGGYQFNDNKIEKVIEEENLLMTSMLDKLKKQGEKVVF
LSPDIEQFKELIKEELGDLAIIPEPIYHLPKASHLGLVGMNLEPEAIHELVPNYLRLAEAEANWQKSQKERQVNE

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=225, Percent_Identity=29.3333333333333, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 26191; Mature: 26191

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILAIDTSNQVLGVSLLNNGEILAELTTNIKKNHSVRLMPAVESLMQQVSMQPEELDRI
CEEEEEECCCCEEEEEEECCCCEEEHHHHHHCCCCCEEEEHHHHHHHHHHCCCHHHCCEE
VVAKGPGSYTGVRIGLSTAKTMAWALEIPVVGVSSLEVLAYQGKFFSGIICPFFDARRGL
EEECCCCCCCEEEEECHHHHHEEEEEECCEECCCCEEEEEECCCHHCCEECCHHHCCCCE
VFTGGYQFNDNKIEKVIEEENLLMTSMLDKLKKQGEKVVFLSPDIEQFKELIKEELGDLA
EEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCEE
IIPEPIYHLPKASHLGLVGMNLEPEAIHELVPNYLRLAEAEANWQKSQKERQVNE
ECCCHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNILAIDTSNQVLGVSLLNNGEILAELTTNIKKNHSVRLMPAVESLMQQVSMQPEELDRI
CEEEEEECCCCEEEEEEECCCCEEEHHHHHHCCCCCEEEEHHHHHHHHHHCCCHHHCCEE
VVAKGPGSYTGVRIGLSTAKTMAWALEIPVVGVSSLEVLAYQGKFFSGIICPFFDARRGL
EEECCCCCCCEEEEECHHHHHEEEEEECCEECCCCEEEEEECCCHHCCEECCHHHCCCCE
VFTGGYQFNDNKIEKVIEEENLLMTSMLDKLKKQGEKVVFLSPDIEQFKELIKEELGDLA
EEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCEE
IIPEPIYHLPKASHLGLVGMNLEPEAIHELVPNYLRLAEAEANWQKSQKERQVNE
ECCCHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]