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The map label for this gene is cspC [H]

Identifier: 23098034

GI number: 23098034

Start: 606231

End: 606428

Strand: Direct

Name: cspC [H]

Synonym: OB0579

Alternate gene names: 23098034

Gene position: 606231-606428 (Clockwise)

Preceding gene: 23098032

Following gene: 23098035

Centisome position: 16.7

GC content: 39.9

Gene sequence:

>198_bases
ATGACTGGTAAAGTAAAATGGTTTAATGCAGAAAAAGGTTTTGGTTTCATCGAGCGTGAAGATGGAGACGATGTATTCGT
ACATTTCTCAGCTATCCAAGCTGATGGTTTCAAAACACTTGAAGAAGGTCAAGACGTTGAATTTGAAATCGTTGAAGGTA
ACCGTGGCCCACAAGCGGCTAACGTAGTTCGTTTATAA

Upstream 100 bases:

>100_bases
ATTGGAGTTTCAGAAATACTTTACGGTCTCTTTTTCAAGATGGTGTAAAAGTATTTAGGATTCAATTTACTTGCAGATCT
TGTTAAAGGAGGTCATTCTA

Downstream 100 bases:

>100_bases
TTTAATCATTAAAATACAATGAGGGCTGCCAATTTGGTAGTCCTCTTTTCTTTTATATGAGAAGTTGTGCTGGTAAACTA
AATAACTGAACAGCTTTGTT

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 64

Protein sequence:

>65_residues
MTGKVKWFNAEKGFGFIEREDGDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGNRGPQAANVVRL

Sequences:

>Translated_65_residues
MTGKVKWFNAEKGFGFIEREDGDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGNRGPQAANVVRL
>Mature_64_residues
TGKVKWFNAEKGFGFIEREDGDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGNRGPQAANVVRL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=69.6969696969697, Blast_Score=92, Evalue=4e-21,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=68.1818181818182, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=66.6666666666667, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=65.1515151515152, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=67.1875, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=66.6666666666667, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=50, Blast_Score=70, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7277; Mature: 7146

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKVKWFNAEKGFGFIEREDGDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGNRGPQAA
CCCCEEEEECCCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC
NVVRL
EEEEC
>Mature Secondary Structure 
TGKVKWFNAEKGFGFIEREDGDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGNRGPQAA
CCCEEEEECCCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC
NVVRL
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]