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The map label for this gene is gerKA [H]

Identifier: 23097938

GI number: 23097938

Start: 510638

End: 512128

Strand: Reverse

Name: gerKA [H]

Synonym: OB0483

Alternate gene names: 23097938

Gene position: 512128-510638 (Counterclockwise)

Preceding gene: 28563908

Following gene: 23097937

Centisome position: 14.11

GC content: 36.02

Gene sequence:

>1491_bases
ATGAGATTTAAAAGAAATAAATCCAAAAAGTCTTTAATAAATCAGGCAAATCTCTCCATAGAGAATATCAAAAGTCAATT
AAATCATACCAGCGATTTAAAAGACCGTGAAATACATAGCAATAATCAAATCTATATTATCCTTTACATCAATTCATTAG
TTGATCAGGAAAAGCTTGAATCAAAAATAATTAAACCGCTTACGAAAATGGAAAACAACAATATTTTAAATGAACTATAT
AGCCAGGAGATCAGCACTGCCAAAAGTAATGAAATAGCCATCAACGGATTATTAGACGGTTATTGTCTGCTAATAAAAAA
AAGCAGGAATAGTGAAGGATTCCTGCTGAAAACGAACGCATCAACCGATAGAGAAGTTTCAGAGGCTATCATAGAAAAAA
CAATCCTTGGGGCAAAAGTAGGTTTTGTTGAAAGCTTAGACAAAAACATTTTTTTACTCCGTACTGTAACAAAATCACCC
GATTTCACGGTTAAAAATTATACATTGGGTTCCTCAACAACAACGAATGTATCACTAATTTATTTGGATCATGTGACAGA
TCCGGAAATCATCAAAAAGGTTGAACAACGTATAAAAAGTATTACGCTTGATTCCATCCGATCAGCAGGAGATATTCAGG
ATTGCATTGAAGACCATACAGTTACTCCATTTCCCCAGCTTTTACTTACAGAACGGCCAGATCGAGCTTCAGCAAATTTA
AAGGACGGAAGGGTTGCTTTAATTATAGATGGAAGTCCTACTGTAATTATATTGCCAGCAACATTTATGACGTTCTTTCA
AACACCGGATGACTATATTACTCGTTGGTGGTTAGGTTCATTTTTTAGGTTTATACGTCTATTCAGCTATATCATTGCAC
TTATTCTACCGGCATTATATATTGCTTTCGTTTCATTCCATTATGAAGCAATTCCTTTGGAGCTTGTTTATTCGCTGCAG
TCTTCGTTGAGCTACGTACCATTTCGGCCATTTATAGAGTTAATGATTATGCAGCTTTCCTTAGAGTTGCTTAGAGAAGC
GTCCATTCGACTGCCACCTTCCGTCGCCACGACTTTTGGGATCGTCGGAGGGCTAGTTGTAGGAACAGCAATGGTTGAGG
CAGGAATTGTCTCCTATGGTGGGCTTATAGTTGTTGCATTAACATCAGTCTCATCATTTGTTCAACCAAATCTTGAAATG
AGCAGCTCGATTCGTATATTAGGATTTCCTTTAATGCTATTGGCAGCTATATTCGGCTTTTTTGGAATTGTCGTTGGAGT
GTTATTTGTGTTAATTCACTTGTCACGCCTTATTTCATTCGGTTTTCCATATTTTTCACCTTTTGTTCCATTAAACATGG
AGAATTTTAAAGATACTATCATTCGTGTTCCTTCTTGGATGATGTATAAACACTCCAAAAATTCTTCTCATTATAAGCAA
GAAAAACGATCAAGGAAGTGGAAACTAGATGAGAGTGAAGAGCAGTATTAG

Upstream 100 bases:

>100_bases
TTGCATTCTCTTTGAAACAACTTCCATCTTCTATTTGCATAATTGTATTCAAATTCCACATACTACTAACAAGAAGTGGC
GGTAAAAAGGGTGTGCAGGG

Downstream 100 bases:

>100_bases
TTCTGTAAATTTATTTTTTCTGCTGGTGCAAACGATGATTGGTGTAGGCTTGTTATCATTACCTCATCAAACACATGAAG
CAGCAGGCAGTGACGGATGG

Product: germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MRFKRNKSKKSLINQANLSIENIKSQLNHTSDLKDREIHSNNQIYIILYINSLVDQEKLESKIIKPLTKMENNNILNELY
SQEISTAKSNEIAINGLLDGYCLLIKKSRNSEGFLLKTNASTDREVSEAIIEKTILGAKVGFVESLDKNIFLLRTVTKSP
DFTVKNYTLGSSTTTNVSLIYLDHVTDPEIIKKVEQRIKSITLDSIRSAGDIQDCIEDHTVTPFPQLLLTERPDRASANL
KDGRVALIIDGSPTVIILPATFMTFFQTPDDYITRWWLGSFFRFIRLFSYIIALILPALYIAFVSFHYEAIPLELVYSLQ
SSLSYVPFRPFIELMIMQLSLELLREASIRLPPSVATTFGIVGGLVVGTAMVEAGIVSYGGLIVVALTSVSSFVQPNLEM
SSSIRILGFPLMLLAAIFGFFGIVVGVLFVLIHLSRLISFGFPYFSPFVPLNMENFKDTIIRVPSWMMYKHSKNSSHYKQ
EKRSRKWKLDESEEQY

Sequences:

>Translated_496_residues
MRFKRNKSKKSLINQANLSIENIKSQLNHTSDLKDREIHSNNQIYIILYINSLVDQEKLESKIIKPLTKMENNNILNELY
SQEISTAKSNEIAINGLLDGYCLLIKKSRNSEGFLLKTNASTDREVSEAIIEKTILGAKVGFVESLDKNIFLLRTVTKSP
DFTVKNYTLGSSTTTNVSLIYLDHVTDPEIIKKVEQRIKSITLDSIRSAGDIQDCIEDHTVTPFPQLLLTERPDRASANL
KDGRVALIIDGSPTVIILPATFMTFFQTPDDYITRWWLGSFFRFIRLFSYIIALILPALYIAFVSFHYEAIPLELVYSLQ
SSLSYVPFRPFIELMIMQLSLELLREASIRLPPSVATTFGIVGGLVVGTAMVEAGIVSYGGLIVVALTSVSSFVQPNLEM
SSSIRILGFPLMLLAAIFGFFGIVVGVLFVLIHLSRLISFGFPYFSPFVPLNMENFKDTIIRVPSWMMYKHSKNSSHYKQ
EKRSRKWKLDESEEQY
>Mature_496_residues
MRFKRNKSKKSLINQANLSIENIKSQLNHTSDLKDREIHSNNQIYIILYINSLVDQEKLESKIIKPLTKMENNNILNELY
SQEISTAKSNEIAINGLLDGYCLLIKKSRNSEGFLLKTNASTDREVSEAIIEKTILGAKVGFVESLDKNIFLLRTVTKSP
DFTVKNYTLGSSTTTNVSLIYLDHVTDPEIIKKVEQRIKSITLDSIRSAGDIQDCIEDHTVTPFPQLLLTERPDRASANL
KDGRVALIIDGSPTVIILPATFMTFFQTPDDYITRWWLGSFFRFIRLFSYIIALILPALYIAFVSFHYEAIPLELVYSLQ
SSLSYVPFRPFIELMIMQLSLELLREASIRLPPSVATTFGIVGGLVVGTAMVEAGIVSYGGLIVVALTSVSSFVQPNLEM
SSSIRILGFPLMLLAAIFGFFGIVVGVLFVLIHLSRLISFGFPYFSPFVPLNMENFKDTIIRVPSWMMYKHSKNSSHYKQ
EKRSRKWKLDESEEQY

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 56176; Mature: 56176

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKRNKSKKSLINQANLSIENIKSQLNHTSDLKDREIHSNNQIYIILYINSLVDQEKLE
CCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECHHHCHHHHH
SKIIKPLTKMENNNILNELYSQEISTAKSNEIAINGLLDGYCLLIKKSRNSEGFLLKTNA
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEECC
STDREVSEAIIEKTILGAKVGFVESLDKNIFLLRTVTKSPDFTVKNYTLGSSTTTNVSLI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEE
YLDHVTDPEIIKKVEQRIKSITLDSIRSAGDIQDCIEDHTVTPFPQLLLTERPDRASANL
EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCC
KDGRVALIIDGSPTVIILPATFMTFFQTPDDYITRWWLGSFFRFIRLFSYIIALILPALY
CCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFVSFHYEAIPLELVYSLQSSLSYVPFRPFIELMIMQLSLELLREASIRLPPSVATTFG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IVGGLVVGTAMVEAGIVSYGGLIVVALTSVSSFVQPNLEMSSSIRILGFPLMLLAAIFGF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
FGIVVGVLFVLIHLSRLISFGFPYFSPFVPLNMENFKDTIIRVPSWMMYKHSKNSSHYKQ
HHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHCCCHHEEECCCCCHHHHH
EKRSRKWKLDESEEQY
HHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRFKRNKSKKSLINQANLSIENIKSQLNHTSDLKDREIHSNNQIYIILYINSLVDQEKLE
CCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECHHHCHHHHH
SKIIKPLTKMENNNILNELYSQEISTAKSNEIAINGLLDGYCLLIKKSRNSEGFLLKTNA
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEECC
STDREVSEAIIEKTILGAKVGFVESLDKNIFLLRTVTKSPDFTVKNYTLGSSTTTNVSLI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEE
YLDHVTDPEIIKKVEQRIKSITLDSIRSAGDIQDCIEDHTVTPFPQLLLTERPDRASANL
EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCC
KDGRVALIIDGSPTVIILPATFMTFFQTPDDYITRWWLGSFFRFIRLFSYIIALILPALY
CCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFVSFHYEAIPLELVYSLQSSLSYVPFRPFIELMIMQLSLELLREASIRLPPSVATTFG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IVGGLVVGTAMVEAGIVSYGGLIVVALTSVSSFVQPNLEMSSSIRILGFPLMLLAAIFGF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
FGIVVGVLFVLIHLSRLISFGFPYFSPFVPLNMENFKDTIIRVPSWMMYKHSKNSSHYKQ
HHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHCCCHHEEECCCCCHHHHH
EKRSRKWKLDESEEQY
HHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]