Click here to switch to the map view.

The map label for this gene is yjkA [H]

Identifier: 23097902

GI number: 23097902

Start: 472894

End: 473661

Strand: Reverse

Name: yjkA [H]

Synonym: OB0447

Alternate gene names: 23097902

Gene position: 473661-472894 (Counterclockwise)

Preceding gene: 23097903

Following gene: 23097901

Centisome position: 13.05

GC content: 34.77

Gene sequence:

>768_bases
ATGAGTATTACAGCACTTTCCCTATCACTAATTTTTGTACTTATTCCCCTTGTATTATCTAAATCATTGAATTTAGGCTT
AGAGAAAGACACAATTGTTGCAACGATCCGTTCCATTATTCAATTATTTGCGGTAGGTTATGTACTCGCTTTAGTATTTG
AAGCCGATAACTATATTTATATTATACTTATGGTCGTATTAATGATAACAGCAGCAACACACAACGCCAGAAAAAAAGGA
GCCTCTATAAAAGGAATTACTTGGAAGTTGGTGACAACTTTTATCCTTATTGAAGTCATCACACAATCAATATTATTAGG
GTTTCAAATCACACCCGCAACCGCACAGTATATTATTCCAATCAGCGGAATGATGGTTGGGAATTCAATGGTATTATCCA
TTTTATTTCTAAATCGATTTACATCTGAAATTGAGACTAGAGAGAACGAAACGGAATTAATTCTATCTCTTGGGGGAACT
CCGAGACAAGCAATTCATACTTCATTAATCCATTCTATTAAGGCTAGTCTGATCCCTACGATTGAGAGCCAAAAAACAAT
AGGATTGGTTCAACTACCCGGTATGATGAGTGGTCAAATAATTGCTGGTGCGGATCCAATTCAAGCAGTTCAATTTCAGT
TACTAATTTTATTCTTATTACTAACAACTGCTGCAGTAACTAGTATTATGCTCGGTTTCTTATCGTATCCGACACTCTTT
AATGAAAGAATGCAAATGATAAGATTACGTACCAAGCAAGAAAATTAA

Upstream 100 bases:

>100_bases
GGGTGATGATGAATGGATCATTATTGGAATCCGGCGACAGTAATTTACTGGAGAATCCTACAAATCCAGCTGTCCGTGAG
TTTATAAAGGGGGAATTATC

Downstream 100 bases:

>100_bases
TTAAAGTGCGTGTTCAAAAGTAGTCAGGTTTTTTGGAAACCCTCTTAAAGTTCATTTGCTTGTATGAGCGCTTGTAGACT
TTTACAATAGAAATATCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSITALSLSLIFVLIPLVLSKSLNLGLEKDTIVATIRSIIQLFAVGYVLALVFEADNYIYIILMVVLMITAATHNARKKG
ASIKGITWKLVTTFILIEVITQSILLGFQITPATAQYIIPISGMMVGNSMVLSILFLNRFTSEIETRENETELILSLGGT
PRQAIHTSLIHSIKASLIPTIESQKTIGLVQLPGMMSGQIIAGADPIQAVQFQLLILFLLLTTAAVTSIMLGFLSYPTLF
NERMQMIRLRTKQEN

Sequences:

>Translated_255_residues
MSITALSLSLIFVLIPLVLSKSLNLGLEKDTIVATIRSIIQLFAVGYVLALVFEADNYIYIILMVVLMITAATHNARKKG
ASIKGITWKLVTTFILIEVITQSILLGFQITPATAQYIIPISGMMVGNSMVLSILFLNRFTSEIETRENETELILSLGGT
PRQAIHTSLIHSIKASLIPTIESQKTIGLVQLPGMMSGQIIAGADPIQAVQFQLLILFLLLTTAAVTSIMLGFLSYPTLF
NERMQMIRLRTKQEN
>Mature_254_residues
SITALSLSLIFVLIPLVLSKSLNLGLEKDTIVATIRSIIQLFAVGYVLALVFEADNYIYIILMVVLMITAATHNARKKGA
SIKGITWKLVTTFILIEVITQSILLGFQITPATAQYIIPISGMMVGNSMVLSILFLNRFTSEIETRENETELILSLGGTP
RQAIHTSLIHSIKASLIPTIESQKTIGLVQLPGMMSGQIIAGADPIQAVQFQLLILFLLLTTAAVTSIMLGFLSYPTLFN
ERMQMIRLRTKQEN

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=254, Percent_Identity=38.1889763779528, Blast_Score=174, Evalue=5e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 28024; Mature: 27893

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITALSLSLIFVLIPLVLSKSLNLGLEKDTIVATIRSIIQLFAVGYVLALVFEADNYIY
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IILMVVLMITAATHNARKKGASIKGITWKLVTTFILIEVITQSILLGFQITPATAQYIIP
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEEEE
ISGMMVGNSMVLSILFLNRFTSEIETRENETELILSLGGTPRQAIHTSLIHSIKASLIPT
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC
IESQKTIGLVQLPGMMSGQIIAGADPIQAVQFQLLILFLLLTTAAVTSIMLGFLSYPTLF
CCCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NERMQMIRLRTKQEN
HHHHHHHHHHHCCCC
>Mature Secondary Structure 
SITALSLSLIFVLIPLVLSKSLNLGLEKDTIVATIRSIIQLFAVGYVLALVFEADNYIY
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IILMVVLMITAATHNARKKGASIKGITWKLVTTFILIEVITQSILLGFQITPATAQYIIP
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEEEE
ISGMMVGNSMVLSILFLNRFTSEIETRENETELILSLGGTPRQAIHTSLIHSIKASLIPT
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC
IESQKTIGLVQLPGMMSGQIIAGADPIQAVQFQLLILFLLLTTAAVTSIMLGFLSYPTLF
CCCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NERMQMIRLRTKQEN
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]