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The map label for this gene is yffB [H]

Identifier: 23097775

GI number: 23097775

Start: 347528

End: 347953

Strand: Direct

Name: yffB [H]

Synonym: OB0320

Alternate gene names: 23097775

Gene position: 347528-347953 (Clockwise)

Preceding gene: 23097772

Following gene: 23097776

Centisome position: 9.57

GC content: 35.45

Gene sequence:

>426_bases
ATGAAGTTTTCTAAAGCAACAAATTATGCATTGCACACGATGGTCTATTTAGCGGATATACCAAAGGGTACATCGATTGG
TGTGGATCGATTAGCGGAAACGCAGAAGTTGTCTCCGACGTATCTTTCCAAAATATTGACCAAATTAGTGAAATCGGGAT
TAATAGAGTCTACGCCAGGTGCTAAAGGTGGATATCGATTAGCGAGAAAAGCGGACAATATTACGTTTTTAGATGTTATT
CGTGCCATAGAAGGACAAACAGTGTTATTTTATTGTTCCATCGATCATGATGACGATTTTTCTAGAAATGAAGAATGTTT
AATAGAGAATGCCATGATTGAAGCGGAAGAAAAAATGAAAGAATCTTTAGATCGTAAATATATTGTGGATATTGCAAAGT
TAATGCGCTCTCAAAAAAATCTTTAA

Upstream 100 bases:

>100_bases
CACAATGAAAATTATTCCATTTGCAAATAGGAGGAACTCGTTGTAAAATTAATTGTAGATAATATAGGTCTATAATAGTT
ATTTGAGAAAGGGTATTAGC

Downstream 100 bases:

>100_bases
TGGAGCGTATTCTTTTTTGAATCTATTATAGATATTATGAGTCTTTAATATATTTATTAAAAGGAGTGTATGATAAATGT
TAGATAGTATTGTTATTGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MKFSKATNYALHTMVYLADIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIESTPGAKGGYRLARKADNITFLDVI
RAIEGQTVLFYCSIDHDDDFSRNEECLIENAMIEAEEKMKESLDRKYIVDIAKLMRSQKNL

Sequences:

>Translated_141_residues
MKFSKATNYALHTMVYLADIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIESTPGAKGGYRLARKADNITFLDVI
RAIEGQTVLFYCSIDHDDDFSRNEECLIENAMIEAEEKMKESLDRKYIVDIAKLMRSQKNL
>Mature_141_residues
MKFSKATNYALHTMVYLADIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIESTPGAKGGYRLARKADNITFLDVI
RAIEGQTVLFYCSIDHDDDFSRNEECLIENAMIEAEEKMKESLDRKYIVDIAKLMRSQKNL

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790621, Length=134, Percent_Identity=25.3731343283582, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 15911; Mature: 15911

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSKATNYALHTMVYLADIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIESTPG
CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
AKGGYRLARKADNITFLDVIRAIEGQTVLFYCSIDHDDDFSRNEECLIENAMIEAEEKMK
CCCCHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
ESLDRKYIVDIAKLMRSQKNL
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFSKATNYALHTMVYLADIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIESTPG
CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
AKGGYRLARKADNITFLDVIRAIEGQTVLFYCSIDHDDDFSRNEECLIENAMIEAEEKMK
CCCCHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
ESLDRKYIVDIAKLMRSQKNL
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7773380; 11337471 [H]