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The map label for this gene is rsiW

Identifier: 23097684

GI number: 23097684

Start: 250748

End: 251389

Strand: Direct

Name: rsiW

Synonym: OB0229

Alternate gene names: 23097684

Gene position: 250748-251389 (Clockwise)

Preceding gene: 23097683

Following gene: 23097685

Centisome position: 6.91

GC content: 38.01

Gene sequence:

>642_bases
GTGAGTTGCAGTAAAGATTATTTAAATTTAATGCATATATATTTAGATGGGGATATCACAAGAGAAGATGAATCGAAGTT
GAGTAGGCATCTAGAAGATTGTGAATCATGTCAAAAACATTTTCATGAACTAAATCGTACGATAACGTTAATGCGTAGTG
CCGAACGAGTAGAAGCACCAGATGGATTTACCGAAAATGTGATGGCGAATCTACCATCGGAGAAGAAGACAGTAAAGTAT
CGACGTTGGTTCAAACTTCACCCAATGTGGACAGCTGCTGCTATTTTTCTTGTCTTGATGGCTGGAGGTATGATATCTAC
TTGGACACATTCCTCTGATCAGCTTGTCGTCTCTGCTCAAAATGAATTAATTGTTGATGGAGATACGGTGATTGTACCAG
CAGGTGTTACTGTTCCAGGTGATGTATTAGTGAAAAATGGCGATTTATTGTTGTTAGGAACAGTAGATGGGGACGTTACT
ATTTTTAATGGGAAAATTCTCGACAATGATTCGGAAATGAATGGAGAAGGATTAATGGCCTCAGTCGGAGGAGTCAATGG
TGAGTTAGAGACAATTGATCGAATGTTTGAGTGGATTTGGTACAATATTAAAAACTTCTTCAAAGGTGTATTCTCCTTTT
AA

Upstream 100 bases:

>100_bases
AATACTCGACATCCCTTTAGGGACAGTGAAAACGAGAATTCATCGGGGAAGGGAAGCCTTACGAAAAAGGCTTCGACATG
TGTAAAGGAGCGTGTTCGAC

Downstream 100 bases:

>100_bases
ATGATATATGTAGGTTAAAATAGTATCTAAGTATCAATATGTATTTAGGTACTATTTTGTTTGGATTTTTATTGTGGTAG
GATATTTGTGTGAAATCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSCSKDYLNLMHIYLDGDITREDESKLSRHLEDCESCQKHFHELNRTITLMRSAERVEAPDGFTENVMANLPSEKKTVKY
RRWFKLHPMWTAAAIFLVLMAGGMISTWTHSSDQLVVSAQNELIVDGDTVIVPAGVTVPGDVLVKNGDLLLLGTVDGDVT
IFNGKILDNDSEMNGEGLMASVGGVNGELETIDRMFEWIWYNIKNFFKGVFSF

Sequences:

>Translated_213_residues
MSCSKDYLNLMHIYLDGDITREDESKLSRHLEDCESCQKHFHELNRTITLMRSAERVEAPDGFTENVMANLPSEKKTVKY
RRWFKLHPMWTAAAIFLVLMAGGMISTWTHSSDQLVVSAQNELIVDGDTVIVPAGVTVPGDVLVKNGDLLLLGTVDGDVT
IFNGKILDNDSEMNGEGLMASVGGVNGELETIDRMFEWIWYNIKNFFKGVFSF
>Mature_212_residues
SCSKDYLNLMHIYLDGDITREDESKLSRHLEDCESCQKHFHELNRTITLMRSAERVEAPDGFTENVMANLPSEKKTVKYR
RWFKLHPMWTAAAIFLVLMAGGMISTWTHSSDQLVVSAQNELIVDGDTVIVPAGVTVPGDVLVKNGDLLLLGTVDGDVTI
FNGKILDNDSEMNGEGLMASVGGVNGELETIDRMFEWIWYNIKNFFKGVFSF

Specific function: Is the anti-sigma factor for sigW. The presence of rsiW leads to the inactivation of sigW, and its proteolytic destruction to sigma-W activation

COG id: COG5662

COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)

Gene ontology:

Cell location: Membrane; Single-pass membrane protein. Note=Site-2 clipped rsiW is released from the membrane to the cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anti-sigma-W factor family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSIW_OCEIH (Q8ETN0)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_691150.1
- GeneID:   1015388
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB0229
- NMPDR:   fig|221109.1.peg.230
- HOGENOM:   HBG475306
- OMA:   YMASAGQ
- ProtClustDB:   CLSK872658
- BioCyc:   OIHE221109:OB0229-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23928; Mature: 23796

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x91f9ed4)-;

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCSKDYLNLMHIYLDGDITREDESKLSRHLEDCESCQKHFHELNRTITLMRSAERVEAP
CCCCHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGFTENVMANLPSEKKTVKYRRWFKLHPMWTAAAIFLVLMAGGMISTWTHSSDQLVVSAQ
CCCHHHHHHCCCCCHHHHHHHHEEEECCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEC
NELIVDGDTVIVPAGVTVPGDVLVKNGDLLLLGTVDGDVTIFNGKILDNDSEMNGEGLMA
CCEEECCCEEEEECCCCCCCCEEEECCCEEEEEECCCCEEEEECEEECCCCCCCCCCEEE
SVGGVNGELETIDRMFEWIWYNIKNFFKGVFSF
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure 
SCSKDYLNLMHIYLDGDITREDESKLSRHLEDCESCQKHFHELNRTITLMRSAERVEAP
CCCHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGFTENVMANLPSEKKTVKYRRWFKLHPMWTAAAIFLVLMAGGMISTWTHSSDQLVVSAQ
CCCHHHHHHCCCCCHHHHHHHHEEEECCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEC
NELIVDGDTVIVPAGVTVPGDVLVKNGDLLLLGTVDGDVTIFNGKILDNDSEMNGEGLMA
CCEEECCCEEEEECCCCCCCCEEEECCCEEEEEECCCCEEEEECEEECCCCCCCCCCEEE
SVGGVNGELETIDRMFEWIWYNIKNFFKGVFSF
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12235376