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The map label for this gene is xpf [H]

Identifier: 23097664

GI number: 23097664

Start: 228398

End: 228910

Strand: Direct

Name: xpf [H]

Synonym: OB0209

Alternate gene names: 23097664

Gene position: 228398-228910 (Clockwise)

Preceding gene: 23097663

Following gene: 23097665

Centisome position: 6.29

GC content: 38.99

Gene sequence:

>513_bases
ATGAGGAAAAAACATGAAAATAAGAATTGGATAGATAGTTTATTAGCAGAGTACGAACATGGAAAGAAAGCATTGGAGAA
CATGAAGAAAGAATTAGATCCAGAAATTGAAATGGATCAAAAGGATATCAACGTACTTGATGAAATGATCAAGGATATGT
CCTATGCCATGAATTGGATGCATATCGGTCGTGAACCGGACAGCTATGGGGGCATAGATAAACGCTCCGCGTATCAACGA
AGGGTAATTTACGACATGGATTTATTACCATCATTAGAAATAGAACCAACAGAGAGAAAGCTTACGGAAAATGAGAAAGT
GATGATTACGGAAATTTTATTGGTGCTATCTCCACGAGAAAGGCAGTGCTATCTGTTGCATATGGCGCAAGGATGGAGTA
TGGGGGAGATATCAGAGGAACTTAATATTGGGAAGTCTTCGGTACAACAATTTATTCAACGAGCGAAAAAGAAAGTCGCT
TGTCGTACGAAAGACATACAAGCCCACCTATAG

Upstream 100 bases:

>100_bases
ATTTAAATAGTAAGTTGTGCTACCAGCTAACTGGAGGACATGAGTTAACGTTACTAACGTTGCTCATGTCCTTTTTCATT
TTAAAGGAGGGATTATTATC

Downstream 100 bases:

>100_bases
GATGAAGGGGAAATAAAAAAATGATTTGCTCTTCAAAATTAGATACTTATAGGAGGAATTTTAAATGGCAGAGATGTTAC
AAGGAAAAAACAAGGTATTA

Product: positive control sigma-like factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MRKKHENKNWIDSLLAEYEHGKKALENMKKELDPEIEMDQKDINVLDEMIKDMSYAMNWMHIGREPDSYGGIDKRSAYQR
RVIYDMDLLPSLEIEPTERKLTENEKVMITEILLVLSPRERQCYLLHMAQGWSMGEISEELNIGKSSVQQFIQRAKKKVA
CRTKDIQAHL

Sequences:

>Translated_170_residues
MRKKHENKNWIDSLLAEYEHGKKALENMKKELDPEIEMDQKDINVLDEMIKDMSYAMNWMHIGREPDSYGGIDKRSAYQR
RVIYDMDLLPSLEIEPTERKLTENEKVMITEILLVLSPRERQCYLLHMAQGWSMGEISEELNIGKSSVQQFIQRAKKKVA
CRTKDIQAHL
>Mature_170_residues
MRKKHENKNWIDSLLAEYEHGKKALENMKKELDPEIEMDQKDINVLDEMIKDMSYAMNWMHIGREPDSYGGIDKRSAYQR
RVIYDMDLLPSLEIEPTERKLTENEKVMITEILLVLSPRERQCYLLHMAQGWSMGEISEELNIGKSSVQQFIQRAKKKVA
CRTKDIQAHL

Specific function: Positive regulatory protein that acts at the late promoter PL [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013249
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20040; Mature: 20040

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKHENKNWIDSLLAEYEHGKKALENMKKELDPEIEMDQKDINVLDEMIKDMSYAMNWM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HIGREPDSYGGIDKRSAYQRRVIYDMDLLPSLEIEPTERKLTENEKVMITEILLVLSPRE
HCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCC
RQCYLLHMAQGWSMGEISEELNIGKSSVQQFIQRAKKKVACRTKDIQAHL
CCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MRKKHENKNWIDSLLAEYEHGKKALENMKKELDPEIEMDQKDINVLDEMIKDMSYAMNWM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HIGREPDSYGGIDKRSAYQRRVIYDMDLLPSLEIEPTERKLTENEKVMITEILLVLSPRE
HCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCC
RQCYLLHMAQGWSMGEISEELNIGKSSVQQFIQRAKKKVACRTKDIQAHL
CCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377 [H]