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The map label for this gene is yfkM [H]

Identifier: 23097478

GI number: 23097478

Start: 27463

End: 27981

Strand: Direct

Name: yfkM [H]

Synonym: OB0023

Alternate gene names: 23097478

Gene position: 27463-27981 (Clockwise)

Preceding gene: 23097477

Following gene: 23097481

Centisome position: 0.76

GC content: 36.8

Gene sequence:

>519_bases
ATGAAAAAACGTATAGCAACCGTAATTACGGATATGTTTGAAGATGTGGAATTCACAGATCCTGTCCAATCCTTTAAAGA
GGCAGGACATGAAGTGATTACAATTGAAAAAGAAAAAGGAAAAACGATTAAAGGAAAGTCGAATGACACAAGTGTAACAA
TAGATGAAAGTATTGATAATGTGAATCCGGAAAACTTTGACGCATTATTTATACCTGGTGGTTTTTCTCCCGATATCCTT
CGTGGAGATGATCGATTTGTAACATTTGCTAAGCATTTTATGGATGAGAAAAAACCGGTAATGGCTATCTGTCATGGACC
ACAGCTATTAATTACTGCTAGATCGCTAGAAGGAAGAGGAGCGACTGGCTATAAATCTATTCAAGTAGATATGGAATATG
CAGGTGCCAAAGTGAAAGACGAAGAAGTAGTCGTCTGTCAAAATCAATTGGTAACTAGTCGTCAACCTGATGATATCCCT
GCATTTAATCGAGAATCATTAAAAGTTCTCGAAGGATAA

Upstream 100 bases:

>100_bases
TACAGTTTGTTTAAAAAAGTAAAAAAGTTACTGATGTTTAATAAAAATCTAAGTTGGGAATTAAGTATGATGTAAGTCAT
TTTAAAGGAGTGGATAAATA

Downstream 100 bases:

>100_bases
ATAATCATTGTATACGAAAGCCTCAAGGAATTACCAAAGTCCCTTGAGGCTTTTTTTGCTAGGTTTAGCAGGCACGGCCT
CAGCTAAATTGAAAAGAAGA

Product: general stress protein 18

Products: NA

Alternate protein names: GSP18 [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MKKRIATVITDMFEDVEFTDPVQSFKEAGHEVITIEKEKGKTIKGKSNDTSVTIDESIDNVNPENFDALFIPGGFSPDIL
RGDDRFVTFAKHFMDEKKPVMAICHGPQLLITARSLEGRGATGYKSIQVDMEYAGAKVKDEEVVVCQNQLVTSRQPDDIP
AFNRESLKVLEG

Sequences:

>Translated_172_residues
MKKRIATVITDMFEDVEFTDPVQSFKEAGHEVITIEKEKGKTIKGKSNDTSVTIDESIDNVNPENFDALFIPGGFSPDIL
RGDDRFVTFAKHFMDEKKPVMAICHGPQLLITARSLEGRGATGYKSIQVDMEYAGAKVKDEEVVVCQNQLVTSRQPDDIP
AFNRESLKVLEG
>Mature_172_residues
MKKRIATVITDMFEDVEFTDPVQSFKEAGHEVITIEKEKGKTIKGKSNDTSVTIDESIDNVNPENFDALFIPGGFSPDIL
RGDDRFVTFAKHFMDEKKPVMAICHGPQLLITARSLEGRGATGYKSIQVDMEYAGAKVKDEEVVVCQNQLVTSRQPDDIP
AFNRESLKVLEG

Specific function: Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins [H]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PfpI endopeptidase domain [H]

Homologues:

Organism=Escherichia coli, GI87082219, Length=170, Percent_Identity=62.3529411764706, Blast_Score=222, Evalue=8e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006286
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 19154; Mature: 19154

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRIATVITDMFEDVEFTDPVQSFKEAGHEVITIEKEKGKTIKGKSNDTSVTIDESIDN
CCHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCCCCEECCCCCCCEEEEECCCCC
VNPENFDALFIPGGFSPDILRGDDRFVTFAKHFMDEKKPVMAICHGPQLLITARSLEGRG
CCCCCCCEEEECCCCCCCEECCCCHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCC
ATGYKSIQVDMEYAGAKVKDEEVVVCQNQLVTSRQPDDIPAFNRESLKVLEG
CCCCEEEEEEEECCCCCCCCCEEEEECCCHHCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MKKRIATVITDMFEDVEFTDPVQSFKEAGHEVITIEKEKGKTIKGKSNDTSVTIDESIDN
CCHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCCCCEECCCCCCCEEEEECCCCC
VNPENFDALFIPGGFSPDILRGDDRFVTFAKHFMDEKKPVMAICHGPQLLITARSLEGRG
CCCCCCCEEEECCCCCCCEECCCCHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCC
ATGYKSIQVDMEYAGAKVKDEEVVVCQNQLVTSRQPDDIPAFNRESLKVLEG
CCCCEEEEEEEECCCCCCCCCEEEEECCCHHCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377; 9298659 [H]