Click here to switch to the map view.

The map label for this gene is dnaD [H]

Identifier: 229918736

GI number: 229918736

Start: 2982296

End: 2982880

Strand: Direct

Name: dnaD [H]

Synonym: EAT1b_3023

Alternate gene names: 229918736

Gene position: 2982296-2982880 (Clockwise)

Preceding gene: 229918735

Following gene: 229918737

Centisome position: 99.41

GC content: 48.89

Gene sequence:

>585_bases
ATGGATGCACATCAATTGATTCAATTATTCGAACAAAGTCCGGTCGTCATTCCACGAAAGCTGTTCACCGATGCGAGACG
CCTCGACTTGTCACCCGTCGAGTTCAGTCTGATCGTCCATCTTCTTGAAATGACGGGAGAAGGCATCGTCATGCCGCTCC
CGAGCGAGTTAGGGAAACGCTTGAATGTTTCGGAGAATGAGGCGCGATCAGTACTCCTCGGTCTATTGCAAAAAGAGTTG
ATCGCCATTGACGCTTCAAGTGATGGTGAGCGATATAGCCTATTGCCACTTTTCGAAGCGTTACAAGGGGAAGAGAAAGT
TGCGCCCCAGCAGACACTGAATGAGAATATCATTCATACGTTTGAGCGGGAATTCGGAACGATCACCCCGTTCGAGATTG
AACAAATCGTCGGCTGGATGACGGAAGATGGCTTCAGCGAGGAACTCATCATGGCCGCGCTTCGGGAAGCGAAACTTCGA
AACGTGCGAAACTTCAAATACATGGACAAAATCCTGCGTGTTTGGCAAGATCATCATGTCGAATCGCTCGAGGATGTCGT
GGAATATCAACGGAGGAATAAGTGA

Upstream 100 bases:

>100_bases
TTCCATTCCCACGTTTATTAAACCGAATTCACCCTTAACGATTAATCGGGGAAGACGTCATGTCCTCCCCGATTGATGTG
TCTTAGAAAGGAAGTGCGAC

Downstream 100 bases:

>100_bases
TGTTGACGCGAGCACAATTACAGGAAGTGTCAGATACGATGAAGCAGATGTTCCCGGATGCTCATTGCGAGTTGACGCAT
CAAAATCCATTCGAATTGGT

Product: primosome, DnaD subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MDAHQLIQLFEQSPVVIPRKLFTDARRLDLSPVEFSLIVHLLEMTGEGIVMPLPSELGKRLNVSENEARSVLLGLLQKEL
IAIDASSDGERYSLLPLFEALQGEEKVAPQQTLNENIIHTFEREFGTITPFEIEQIVGWMTEDGFSEELIMAALREAKLR
NVRNFKYMDKILRVWQDHHVESLEDVVEYQRRNK

Sequences:

>Translated_194_residues
MDAHQLIQLFEQSPVVIPRKLFTDARRLDLSPVEFSLIVHLLEMTGEGIVMPLPSELGKRLNVSENEARSVLLGLLQKEL
IAIDASSDGERYSLLPLFEALQGEEKVAPQQTLNENIIHTFEREFGTITPFEIEQIVGWMTEDGFSEELIMAALREAKLR
NVRNFKYMDKILRVWQDHHVESLEDVVEYQRRNK
>Mature_194_residues
MDAHQLIQLFEQSPVVIPRKLFTDARRLDLSPVEFSLIVHLLEMTGEGIVMPLPSELGKRLNVSENEARSVLLGLLQKEL
IAIDASSDGERYSLLPLFEALQGEEKVAPQQTLNENIIHTFEREFGTITPFEIEQIVGWMTEDGFSEELIMAALREAKLR
NVRNFKYMDKILRVWQDHHVESLEDVVEYQRRNK

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 22416; Mature: 22416

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAHQLIQLFEQSPVVIPRKLFTDARRLDLSPVEFSLIVHLLEMTGEGIVMPLPSELGKR
CCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCC
LNVSENEARSVLLGLLQKELIAIDASSDGERYSLLPLFEALQGEEKVAPQQTLNENIIHT
CCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHH
FEREFGTITPFEIEQIVGWMTEDGFSEELIMAALREAKLRNVRNFKYMDKILRVWQDHHV
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
ESLEDVVEYQRRNK
HHHHHHHHHHHCCC
>Mature Secondary Structure
MDAHQLIQLFEQSPVVIPRKLFTDARRLDLSPVEFSLIVHLLEMTGEGIVMPLPSELGKR
CCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCC
LNVSENEARSVLLGLLQKELIAIDASSDGERYSLLPLFEALQGEEKVAPQQTLNENIIHT
CCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHH
FEREFGTITPFEIEQIVGWMTEDGFSEELIMAALREAKLRNVRNFKYMDKILRVWQDHHV
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
ESLEDVVEYQRRNK
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]