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The map label for this gene is ypfA [H]

Identifier: 229918697

GI number: 229918697

Start: 2947861

End: 2948526

Strand: Direct

Name: ypfA [H]

Synonym: EAT1b_2984

Alternate gene names: 229918697

Gene position: 2947861-2948526 (Clockwise)

Preceding gene: 229918696

Following gene: 229918698

Centisome position: 98.27

GC content: 46.85

Gene sequence:

>666_bases
ATGTTAAAAGAAGGTCAAGAATTGAGAATCGAAGTGGAAGGGCGTGCAGAGGGGAAAACGAAAATTGCGGCCATCACCGA
TCAAGTCGTATGGATTGAGTCACCAAGTGACATGATGACGCTTAAAACGTTTTTTTTACACGAAGAGGAGGCCATGCGGG
TCTTTTTCTTCCAAGGAGACAATCAGCTGTTCGCGTTCGACACGAAAATCGTGAAACGGATCAGCGATGCCCAAATGACA
TTACGTTATGCGTTCAATTTGCCAGACGAGAAGAAAATCAAGCGGATTCAGCGTCGTGAATATTTACGTGTTCCAGAAAT
GATTGACGTGACCGTTCTTGCAGCCGATGGGGAAAGTTTCGAATCGTTTGAAACGACATCACTCGACGTCTCGGCAGGTG
GGATGAAAATCATCGCGAACCGTGCCCCGGTCGAAGTGGATGAATCCTTGGTTGTCGTATTTCGAATTGAAGACGAGCAA
GGTTCACCTCAGCTCTTCCGTATAAAGAGCCGCCTTGTTCGCGTACATAAGCAGGAAGTGAAGCAAGAACTCTCTTTGGC
ATTCGAAGATTTGACCCCTCGTGACCAAGAGACGATTTTGCGATACTGCTTCCGTGTTCAGCTTGAAGCGCGAAAGCGGA
CAGGGTCTGTATTTTCTTCAAGATAA

Upstream 100 bases:

>100_bases
CGTGCTTTATATCGTCATTTTATGGACCGTGGCACTTTTGCTCGTGCGAGCGGCCAACTTATCCAATCGTCGTCAATTTA
AATAAAGGGGAAGAGTCAGC

Downstream 100 bases:

>100_bases
AAAACTGTTATGATGTTCTCGGGATTATTGACCGAGAGGAGGAGGGTATCGGGAACACTCGATACCCGTTTTGTATGAAA
AAATCATTACAAATTGCTTT

Product: type IV pilus assembly PilZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MLKEGQELRIEVEGRAEGKTKIAAITDQVVWIESPSDMMTLKTFFLHEEEAMRVFFFQGDNQLFAFDTKIVKRISDAQMT
LRYAFNLPDEKKIKRIQRREYLRVPEMIDVTVLAADGESFESFETTSLDVSAGGMKIIANRAPVEVDESLVVVFRIEDEQ
GSPQLFRIKSRLVRVHKQEVKQELSLAFEDLTPRDQETILRYCFRVQLEARKRTGSVFSSR

Sequences:

>Translated_221_residues
MLKEGQELRIEVEGRAEGKTKIAAITDQVVWIESPSDMMTLKTFFLHEEEAMRVFFFQGDNQLFAFDTKIVKRISDAQMT
LRYAFNLPDEKKIKRIQRREYLRVPEMIDVTVLAADGESFESFETTSLDVSAGGMKIIANRAPVEVDESLVVVFRIEDEQ
GSPQLFRIKSRLVRVHKQEVKQELSLAFEDLTPRDQETILRYCFRVQLEARKRTGSVFSSR
>Mature_221_residues
MLKEGQELRIEVEGRAEGKTKIAAITDQVVWIESPSDMMTLKTFFLHEEEAMRVFFFQGDNQLFAFDTKIVKRISDAQMT
LRYAFNLPDEKKIKRIQRREYLRVPEMIDVTVLAADGESFESFETTSLDVSAGGMKIIANRAPVEVDESLVVVFRIEDEQ
GSPQLFRIKSRLVRVHKQEVKQELSLAFEDLTPRDQETILRYCFRVQLEARKRTGSVFSSR

Specific function: Unknown

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875 [H]

Pfam domain/function: PF07238 PilZ [H]

EC number: NA

Molecular weight: Translated: 25619; Mature: 25619

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKEGQELRIEVEGRAEGKTKIAAITDQVVWIESPSDMMTLKTFFLHEEEAMRVFFFQGD
CCCCCCEEEEEEECCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHCCCCCCEEEEEEECC
NQLFAFDTKIVKRISDAQMTLRYAFNLPDEKKIKRIQRREYLRVPEMIDVTVLAADGESF
CEEEEECHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
ESFETTSLDVSAGGMKIIANRAPVEVDESLVVVFRIEDEQGSPQLFRIKSRLVRVHKQEV
CCCCCEEEEECCCCEEEEECCCCCEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
KQELSLAFEDLTPRDQETILRYCFRVQLEARKRTGSVFSSR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLKEGQELRIEVEGRAEGKTKIAAITDQVVWIESPSDMMTLKTFFLHEEEAMRVFFFQGD
CCCCCCEEEEEEECCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHCCCCCCEEEEEEECC
NQLFAFDTKIVKRISDAQMTLRYAFNLPDEKKIKRIQRREYLRVPEMIDVTVLAADGESF
CEEEEECHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
ESFETTSLDVSAGGMKIIANRAPVEVDESLVVVFRIEDEQGSPQLFRIKSRLVRVHKQEV
CCCCCEEEEECCCCEEEEECCCCCEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
KQELSLAFEDLTPRDQETILRYCFRVQLEARKRTGSVFSSR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]