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The map label for this gene is ymfC [H]

Identifier: 229918681

GI number: 229918681

Start: 2932199

End: 2932918

Strand: Direct

Name: ymfC [H]

Synonym: EAT1b_2968

Alternate gene names: 229918681

Gene position: 2932199-2932918 (Clockwise)

Preceding gene: 229918680

Following gene: 229918682

Centisome position: 97.74

GC content: 45.97

Gene sequence:

>720_bases
ATGTCGATTAAGCTCGATCATCGATTGCTCTATCTTCGAGTGATTGAGAAAATTAAGCAAGATATCGACGCTGGTGTCTA
TCGTGAAGGGGAAAAATTACCTTCAGAATTTGAACTTTCGAAGCAACTTGGAGTCAGTCGAGCGACACTTCGCGAAGCGC
TCCGAATTCTCGAAGACGAGAAATTTGTCGTGCGAAAGCATGGGGTAGGGACATTTATCAGTTCTAAACCGCCATTCACG
TCAGGGATTGAAGAATTGTTCAGTGTCACTGACATGATCACACGAGCGAAGATGACACCAGGAACGAAAGTATTGGTGGC
CGAGAAAGTGTTGGCAACAGAGAGAGAAGCCGAGCGTCTCAAGATTGAGCCGAACTCACCGATTTATCGAATTGTTCGAA
TTCGATATGCGGACGACACACCGGTTGTGTATTGTGTCGATAAAGTGCCGGCCCATCTCGTCTCAAATCCTGAGGCATTG
ACTGAAGGGAAATCGTTGTTTGATTCTCTGGAACAAGAGGTAGGACGTCGAGTCGCTTATGCGATCACGCACATCGAACC
GAGTGTCAGCGCTGAAATCTCGTCACAACTTCAGACGGACCAACCGTTACTCGCTTTAAAACAATTGCATTATGATGAGA
GTGATTTACCATTACTCGATTCGGCCAACTTTTTCCGTGCTGATCGATTCGACTTCCATGTCGTACGTAAACGAGTTTAA

Upstream 100 bases:

>100_bases
ATTGCGTTCTAATTCTCGAATCCCTATACTTAATATTGGCAAGGACATTCATACGTCAGATGTCTGAGCACTGGTAAGTA
AATTAAAGGTGGTGAGGCCA

Downstream 100 bases:

>100_bases
ACGAGCAGTTTCTGGACGGAAGAGTTATTTTTGGGGAACAGCGTGAAAGCGCTTTCTTATACCGGTGTAAAGACTACTGA
TAACATGACAACAAAATTTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSIKLDHRLLYLRVIEKIKQDIDAGVYREGEKLPSEFELSKQLGVSRATLREALRILEDEKFVVRKHGVGTFISSKPPFT
SGIEELFSVTDMITRAKMTPGTKVLVAEKVLATEREAERLKIEPNSPIYRIVRIRYADDTPVVYCVDKVPAHLVSNPEAL
TEGKSLFDSLEQEVGRRVAYAITHIEPSVSAEISSQLQTDQPLLALKQLHYDESDLPLLDSANFFRADRFDFHVVRKRV

Sequences:

>Translated_239_residues
MSIKLDHRLLYLRVIEKIKQDIDAGVYREGEKLPSEFELSKQLGVSRATLREALRILEDEKFVVRKHGVGTFISSKPPFT
SGIEELFSVTDMITRAKMTPGTKVLVAEKVLATEREAERLKIEPNSPIYRIVRIRYADDTPVVYCVDKVPAHLVSNPEAL
TEGKSLFDSLEQEVGRRVAYAITHIEPSVSAEISSQLQTDQPLLALKQLHYDESDLPLLDSANFFRADRFDFHVVRKRV
>Mature_238_residues
SIKLDHRLLYLRVIEKIKQDIDAGVYREGEKLPSEFELSKQLGVSRATLREALRILEDEKFVVRKHGVGTFISSKPPFTS
GIEELFSVTDMITRAKMTPGTKVLVAEKVLATEREAERLKIEPNSPIYRIVRIRYADDTPVVYCVDKVPAHLVSNPEALT
EGKSLFDSLEQEVGRRVAYAITHIEPSVSAEISSQLQTDQPLLALKQLHYDESDLPLLDSANFFRADRFDFHVVRKRV

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=239, Percent_Identity=30.5439330543933, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082252, Length=240, Percent_Identity=27.9166666666667, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790118, Length=233, Percent_Identity=26.1802575107296, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786950, Length=149, Percent_Identity=26.8456375838926, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27194; Mature: 27062

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKLDHRLLYLRVIEKIKQDIDAGVYREGEKLPSEFELSKQLGVSRATLREALRILEDE
CCEECHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
KFVVRKHGVGTFISSKPPFTSGIEELFSVTDMITRAKMTPGTKVLVAEKVLATEREAERL
HHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHEE
KIEPNSPIYRIVRIRYADDTPVVYCVDKVPAHLVSNPEALTEGKSLFDSLEQEVGRRVAY
EECCCCCEEEEEEEEECCCCCEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AITHIEPSVSAEISSQLQTDQPLLALKQLHYDESDLPLLDSANFFRADRFDFHVVRKRV
HHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHCCCHHHHHHHHCC
>Mature Secondary Structure 
SIKLDHRLLYLRVIEKIKQDIDAGVYREGEKLPSEFELSKQLGVSRATLREALRILEDE
CEECHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
KFVVRKHGVGTFISSKPPFTSGIEELFSVTDMITRAKMTPGTKVLVAEKVLATEREAERL
HHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHEE
KIEPNSPIYRIVRIRYADDTPVVYCVDKVPAHLVSNPEALTEGKSLFDSLEQEVGRRVAY
EECCCCCEEEEEEEEECCCCCEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AITHIEPSVSAEISSQLQTDQPLLALKQLHYDESDLPLLDSANFFRADRFDFHVVRKRV
HHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]