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The map label for this gene is rimM

Identifier: 229918607

GI number: 229918607

Start: 2860106

End: 2860624

Strand: Direct

Name: rimM

Synonym: EAT1b_2894

Alternate gene names: 229918607

Gene position: 2860106-2860624 (Clockwise)

Preceding gene: 229918606

Following gene: 229918608

Centisome position: 95.34

GC content: 46.82

Gene sequence:

>519_bases
ATGGACTGGTTATATGTAGGGAAAATCGCCAATACGCACGGCCTGAAAGGGGAAGTGAAGATCTTGGCGGCGACAGACTT
TCCAGAAGAACGATTTAAAAAAGGAAACACGTTGTTCCTTGATGTCGACGGAACGAAACAGGAAATGACGATCACGACGT
ATCGTCCGCATAAGCAGTTTCACCTCGTCACGTTCAAAGGGTTTGACAATATCAATCTCATTGAAAAATATAAAGGGCTG
AAACTGTATGTCCACGCCGAACACGTCCACGATTTGGATGAACACGAATTTTATTATCATGAAATCATCGGCTGCGAGGC
TGTCGTGGATGGGGAAGTCATCGGTGTCGTCGACGACATCTTTGAAACGAACGGAGCGAACGATGTCTGGGTCATCAAAC
GACCAGGCAAGTCGGATGCGCTCATCCCTTATATAGAATCGGTCGTCCAAGAGATCGATGTCGATGCGAAACGTGTCGTC
ATCACGCCAATCCCAGGAATGATTGACGATGAAGATTGA

Upstream 100 bases:

>100_bases
AGCAGGGATCATGGAGAAATTCCACAACGCGAAAAACGCGAAGTAATGATGTGGCCGACCTTTTCTGAGGTCGGCCTATT
TTGTTGAGGAGGGAATAGAG

Downstream 100 bases:

>100_bases
TGTATTGACGTTGTTCCCCGAGATGTTTCATGCGCTCGATCACTCCATCGTTGGTCGAGCGAAGACGCTCGGGCAAGTGG
AGATGTCGTTCCTCAACTTC

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MDWLYVGKIANTHGLKGEVKILAATDFPEERFKKGNTLFLDVDGTKQEMTITTYRPHKQFHLVTFKGFDNINLIEKYKGL
KLYVHAEHVHDLDEHEFYYHEIIGCEAVVDGEVIGVVDDIFETNGANDVWVIKRPGKSDALIPYIESVVQEIDVDAKRVV
ITPIPGMIDDED

Sequences:

>Translated_172_residues
MDWLYVGKIANTHGLKGEVKILAATDFPEERFKKGNTLFLDVDGTKQEMTITTYRPHKQFHLVTFKGFDNINLIEKYKGL
KLYVHAEHVHDLDEHEFYYHEIIGCEAVVDGEVIGVVDDIFETNGANDVWVIKRPGKSDALIPYIESVVQEIDVDAKRVV
ITPIPGMIDDED
>Mature_172_residues
MDWLYVGKIANTHGLKGEVKILAATDFPEERFKKGNTLFLDVDGTKQEMTITTYRPHKQFHLVTFKGFDNINLIEKYKGL
KLYVHAEHVHDLDEHEFYYHEIIGCEAVVDGEVIGVVDDIFETNGANDVWVIKRPGKSDALIPYIESVVQEIDVDAKRVV
ITPIPGMIDDED

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=24.7058823529412, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_EXISA (C4L602)

Other databases:

- EMBL:   CP001615
- RefSeq:   YP_002887253.1
- ProteinModelPortal:   C4L602
- GeneID:   7870149
- GenomeReviews:   CP001615_GR
- KEGG:   eat:EAT1b_2894
- OMA:   PDEFYDH
- ProtClustDB:   CLSK2489520
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19603; Mature: 19603

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWLYVGKIANTHGLKGEVKILAATDFPEERFKKGNTLFLDVDGTKQEMTITTYRPHKQF
CCEEEEEEECCCCCCCCEEEEEEECCCCHHHHCCCCEEEEEECCCCCEEEEEEECCCCEE
HLVTFKGFDNINLIEKYKGLKLYVHAEHVHDLDEHEFYYHEIIGCEAVVDGEVIGVVDDI
EEEEEECCCCCCHHHHCCCEEEEEEEHHCCCCCCCCEEEHHHCCCEEEECCEEEEEEHHH
FETNGANDVWVIKRPGKSDALIPYIESVVQEIDVDAKRVVITPIPGMIDDED
HHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MDWLYVGKIANTHGLKGEVKILAATDFPEERFKKGNTLFLDVDGTKQEMTITTYRPHKQF
CCEEEEEEECCCCCCCCEEEEEEECCCCHHHHCCCCEEEEEECCCCCEEEEEEECCCCEE
HLVTFKGFDNINLIEKYKGLKLYVHAEHVHDLDEHEFYYHEIIGCEAVVDGEVIGVVDDI
EEEEEECCCCCCHHHHCCCEEEEEEEHHCCCCCCCCEEEHHHCCCEEEECCEEEEEEHHH
FETNGANDVWVIKRPGKSDALIPYIESVVQEIDVDAKRVVITPIPGMIDDED
HHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA