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The map label for this gene is rpe [H]

Identifier: 229918586

GI number: 229918586

Start: 2840331

End: 2840987

Strand: Direct

Name: rpe [H]

Synonym: EAT1b_2873

Alternate gene names: 229918586

Gene position: 2840331-2840987 (Clockwise)

Preceding gene: 229918585

Following gene: 229918587

Centisome position: 94.68

GC content: 48.86

Gene sequence:

>657_bases
ATGATTAAAATCGCACCATCAATTTTAGCAGCCGACTTTGCCAATTTGGAGGCTGAAGTGAAAGCCGTTCAAGATGCGGG
GGCGGATTATATCCATTTTGACGTGATGGATGGGCAGTTCGTGCCGAACATCTCGATTGGGCTACCGGTCCTCGCAAGCT
TGCGCAAAAAATCAGACATGGTTCTCGATGTGCATTTGATGATTGATCAACCGGAACGCTATGTCGAAGATTTCGTCAAG
GCGGGGGCAGACATTGTGACTGTTCACGTGGAAGCAACGAACCATTTACATCGAGTCTTGCAGCAAATCAAAGCGGCAGG
GGCGAAATGTGGGGTCGTCTTGAACCCGCACACACCGCTCTCTACGATTGAACATATCCTTCAAGATGTCGATATGGTAT
TGCTCATGACCGTCAATCCAGGGTTTGGTGGACAAGCGTTCATTGAATCCGTCGTACCGAAAATCTCGGCGCTCAGTCAG
CTTCGCAAAGACCGTCAGCTCGATTTTGAAATTGAGATTGATGGTGGTGTCAACGAAGAGACGGCGAAACGTTGCATTGA
TGCAGGGGCAGATGTCCTAGTTGCCGGTTCGGCCATTTACAATCAACCGGATTATAAAGCAGCCATCGATAGCATTCGTG
GCGCATCTCGTGTATAA

Upstream 100 bases:

>100_bases
TAAACAAGCCGTAGAAGATGGCAAAATTGCTTCAACTCGTTATGAGAATTATGTTACCTTTATGGAGGAGTTAAACGATC
GTAAACGGAGGTATTGACAG

Downstream 100 bases:

>100_bases
TCGACGGTAGAACAACAAGATAGAGTCGCAAGGGGTGTCACATGATGTGGCTGAGAGGCATACGCTAACCCTTTGAACCT
GTTCCGTTCACACGGACGTA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MIKIAPSILAADFANLEAEVKAVQDAGADYIHFDVMDGQFVPNISIGLPVLASLRKKSDMVLDVHLMIDQPERYVEDFVK
AGADIVTVHVEATNHLHRVLQQIKAAGAKCGVVLNPHTPLSTIEHILQDVDMVLLMTVNPGFGGQAFIESVVPKISALSQ
LRKDRQLDFEIEIDGGVNEETAKRCIDAGADVLVAGSAIYNQPDYKAAIDSIRGASRV

Sequences:

>Translated_218_residues
MIKIAPSILAADFANLEAEVKAVQDAGADYIHFDVMDGQFVPNISIGLPVLASLRKKSDMVLDVHLMIDQPERYVEDFVK
AGADIVTVHVEATNHLHRVLQQIKAAGAKCGVVLNPHTPLSTIEHILQDVDMVLLMTVNPGFGGQAFIESVVPKISALSQ
LRKDRQLDFEIEIDGGVNEETAKRCIDAGADVLVAGSAIYNQPDYKAAIDSIRGASRV
>Mature_218_residues
MIKIAPSILAADFANLEAEVKAVQDAGADYIHFDVMDGQFVPNISIGLPVLASLRKKSDMVLDVHLMIDQPERYVEDFVK
AGADIVTVHVEATNHLHRVLQQIKAAGAKCGVVLNPHTPLSTIEHILQDVDMVLLMTVNPGFGGQAFIESVVPKISALSQ
LRKDRQLDFEIEIDGGVNEETAKRCIDAGADVLVAGSAIYNQPDYKAAIDSIRGASRV

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=213, Percent_Identity=43.1924882629108, Blast_Score=186, Evalue=1e-47,
Organism=Homo sapiens, GI219879828, Length=213, Percent_Identity=41.7840375586854, Blast_Score=176, Evalue=2e-44,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=2e-23,
Organism=Escherichia coli, GI1789788, Length=211, Percent_Identity=48.8151658767773, Blast_Score=203, Evalue=6e-54,
Organism=Escherichia coli, GI1790523, Length=203, Percent_Identity=35.9605911330049, Blast_Score=162, Evalue=1e-41,
Organism=Escherichia coli, GI1790754, Length=204, Percent_Identity=27.4509803921569, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=220, Percent_Identity=40, Blast_Score=165, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6322341, Length=214, Percent_Identity=42.0560747663551, Blast_Score=180, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=40.5660377358491, Blast_Score=179, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23581; Mature: 23581

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKIAPSILAADFANLEAEVKAVQDAGADYIHFDVMDGQFVPNISIGLPVLASLRKKSDM
CEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCE
VLDVHLMIDQPERYVEDFVKAGADIVTVHVEATNHLHRVLQQIKAAGAKCGVVLNPHTPL
EEEEEEEECCCHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEECCCCCH
STIEHILQDVDMVLLMTVNPGFGGQAFIESVVPKISALSQLRKDRQLDFEIEIDGGVNEE
HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
TAKRCIDAGADVLVAGSAIYNQPDYKAAIDSIRGASRV
HHHHHHHCCCCEEEECHHHCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MIKIAPSILAADFANLEAEVKAVQDAGADYIHFDVMDGQFVPNISIGLPVLASLRKKSDM
CEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCE
VLDVHLMIDQPERYVEDFVKAGADIVTVHVEATNHLHRVLQQIKAAGAKCGVVLNPHTPL
EEEEEEEECCCHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEECCCCCH
STIEHILQDVDMVLLMTVNPGFGGQAFIESVVPKISALSQLRKDRQLDFEIEIDGGVNEE
HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
TAKRCIDAGADVLVAGSAIYNQPDYKAAIDSIRGASRV
HHHHHHHCCCCEEEECHHHCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]