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The map label for this gene is rsmB [H]

Identifier: 229918581

GI number: 229918581

Start: 2834276

End: 2835607

Strand: Direct

Name: rsmB [H]

Synonym: EAT1b_2868

Alternate gene names: 229918581

Gene position: 2834276-2835607 (Clockwise)

Preceding gene: 229918580

Following gene: 229918582

Centisome position: 94.48

GC content: 49.25

Gene sequence:

>1332_bases
ATGAACGTACGTGAAGCAGCGCTTGATACGCTGATGAAAATTGAACAAGGTGGCGCATATTCGACGATTGCCGTCAATGA
TACATTGAAACAAAAAAAAGTTGCCCCAAAAGATGTCGGCCTTTATACCGAACTCGTATATGGGACGCTTAGTCGCAAAG
GAACGCTCGATTATATTTTGAAAGACCGGATCCGTTCGCCGAAGAAGCTCGACAAGTTTGTCCTCCCGCTTCTTCGGATG
AGCGTTTACCAACTCTTCTATCTTGATAAAGTACCCGATCGGGCCGTCCTACATGAGGCGGTCGAAATCGCGAAGAAACG
AGGGCATCATCTCGGAACGAGCAAATTCGTAAACGGAGTGTTACGCAATGTGCTTCGGGAAGGGTTTCCGGACTTTAGTA
GTTTGACCGATGCGGAACGAATCGCCATCGAGCATAGTCATCCGGAATGGCTCGTATCAGACTGGATTGAGTTATATGGC
GTGGAGACGGCAGAAGCGATTTGCCGATTGAACAATGAACCTGCCCCTGTCACGATTCGAGTCAATCGAAAGCGCATTTC
AGTGGATGAGATGATGAACCGGTTGGCTGATGCTGGCGTCATGACGTCACGTTCGGAACTGTCGGCAGATGGACTCGTCG
TAGAGTCTGGTAATGTTCATGCGACCCCATTTATCGAGGAAGGTCTCCTATCGATTCAAGATGAAAGCTCCATGATTGTC
GCGGATGCACTCGGCGTGTCGAAAGACGATGTCATCCTAGACGCATGTGCCGCACCAGGCGGCAAGGCGATGCATACGGC
AGAGCGAATGCAAGGTGGGTCGCTCACCGCGCTTGACCTTCATCCGCACAAAGCAAAATTGATTGACCAACAAGCGAAAC
GTCTACACATCAATGGAGTGACCGCACTTGCCCTTGATGCTCGTTTAGCAGGTGAACGGTTTGAAGAAGAGAGTTTTGAC
CGGATTCTTTTAGATGTCCCTTGCTCGGGCCTTGGCGTCATTCGTCGAAAGCCGGATATTAAATGGACGAAGGACAAAGC
CCAGCTTGAAAACTTACCGAAGATTCAAAGACAAATCATTGATGCCGTATTGCCACTGCTCAAACCAGGTGGTACGCTAG
TTTACTCGACATGTACAATCGACCCGTCTGAAAACGAGACGCAGGCTGACTACATGTTGTCGAAAGGATTGGTGTGGGAC
GAAACGCTCAAAGGACGTCTCCCACAATCTGTTCGTCCGATGATGGAATCGGACCGTGCTGAACTAAAATTATTACCGAC
GACATTCGGGACCGACGGCTTCTATATCGCCGCATTTAAGAAAGAGGTATAA

Upstream 100 bases:

>100_bases
ACCGATTTGCAACCTGCAGGTAAGAAACGGATGGATGGTGCAACCTTCATGCGTGGTGCCGGACAAAAGCTACGGATTGG
CGACCGATTAGGAGGAACAC

Downstream 100 bases:

>100_bases
AACATGAATCCAAAAGCAGTAGAAAAGAATCCACTCGTAGGCGCAAAACCGTCACTTTATTCGTTGACGTTCCCCGAACT
TGAGGCATGGGTGATCGAGG

Product: sun protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MNVREAALDTLMKIEQGGAYSTIAVNDTLKQKKVAPKDVGLYTELVYGTLSRKGTLDYILKDRIRSPKKLDKFVLPLLRM
SVYQLFYLDKVPDRAVLHEAVEIAKKRGHHLGTSKFVNGVLRNVLREGFPDFSSLTDAERIAIEHSHPEWLVSDWIELYG
VETAEAICRLNNEPAPVTIRVNRKRISVDEMMNRLADAGVMTSRSELSADGLVVESGNVHATPFIEEGLLSIQDESSMIV
ADALGVSKDDVILDACAAPGGKAMHTAERMQGGSLTALDLHPHKAKLIDQQAKRLHINGVTALALDARLAGERFEEESFD
RILLDVPCSGLGVIRRKPDIKWTKDKAQLENLPKIQRQIIDAVLPLLKPGGTLVYSTCTIDPSENETQADYMLSKGLVWD
ETLKGRLPQSVRPMMESDRAELKLLPTTFGTDGFYIAAFKKEV

Sequences:

>Translated_443_residues
MNVREAALDTLMKIEQGGAYSTIAVNDTLKQKKVAPKDVGLYTELVYGTLSRKGTLDYILKDRIRSPKKLDKFVLPLLRM
SVYQLFYLDKVPDRAVLHEAVEIAKKRGHHLGTSKFVNGVLRNVLREGFPDFSSLTDAERIAIEHSHPEWLVSDWIELYG
VETAEAICRLNNEPAPVTIRVNRKRISVDEMMNRLADAGVMTSRSELSADGLVVESGNVHATPFIEEGLLSIQDESSMIV
ADALGVSKDDVILDACAAPGGKAMHTAERMQGGSLTALDLHPHKAKLIDQQAKRLHINGVTALALDARLAGERFEEESFD
RILLDVPCSGLGVIRRKPDIKWTKDKAQLENLPKIQRQIIDAVLPLLKPGGTLVYSTCTIDPSENETQADYMLSKGLVWD
ETLKGRLPQSVRPMMESDRAELKLLPTTFGTDGFYIAAFKKEV
>Mature_443_residues
MNVREAALDTLMKIEQGGAYSTIAVNDTLKQKKVAPKDVGLYTELVYGTLSRKGTLDYILKDRIRSPKKLDKFVLPLLRM
SVYQLFYLDKVPDRAVLHEAVEIAKKRGHHLGTSKFVNGVLRNVLREGFPDFSSLTDAERIAIEHSHPEWLVSDWIELYG
VETAEAICRLNNEPAPVTIRVNRKRISVDEMMNRLADAGVMTSRSELSADGLVVESGNVHATPFIEEGLLSIQDESSMIV
ADALGVSKDDVILDACAAPGGKAMHTAERMQGGSLTALDLHPHKAKLIDQQAKRLHINGVTALALDARLAGERFEEESFD
RILLDVPCSGLGVIRRKPDIKWTKDKAQLENLPKIQRQIIDAVLPLLKPGGTLVYSTCTIDPSENETQADYMLSKGLVWD
ETLKGRLPQSVRPMMESDRAELKLLPTTFGTDGFYIAAFKKEV

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=319, Percent_Identity=33.2288401253918, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI76150623, Length=319, Percent_Identity=33.2288401253918, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI32698918, Length=178, Percent_Identity=40.4494382022472, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI40316918, Length=191, Percent_Identity=31.9371727748691, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI301336155, Length=188, Percent_Identity=36.1702127659575, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI39995082, Length=188, Percent_Identity=36.1702127659575, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI11545785, Length=158, Percent_Identity=30.379746835443, Blast_Score=74, Evalue=4e-13,
Organism=Escherichia coli, GI2367212, Length=449, Percent_Identity=33.4075723830735, Blast_Score=201, Evalue=1e-52,
Organism=Escherichia coli, GI87081985, Length=285, Percent_Identity=31.2280701754386, Blast_Score=125, Evalue=6e-30,
Organism=Caenorhabditis elegans, GI17536757, Length=323, Percent_Identity=30.9597523219814, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI71998419, Length=239, Percent_Identity=28.0334728033473, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI115534021, Length=239, Percent_Identity=28.0334728033473, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI25143471, Length=213, Percent_Identity=32.8638497652582, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17509941, Length=169, Percent_Identity=33.7278106508876, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324268, Length=318, Percent_Identity=29.559748427673, Blast_Score=111, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6319447, Length=175, Percent_Identity=36, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24668781, Length=268, Percent_Identity=34.7014925373134, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI22024126, Length=282, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI21356513, Length=268, Percent_Identity=34.7014925373134, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI21355201, Length=176, Percent_Identity=36.3636363636364, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI19920494, Length=186, Percent_Identity=31.7204301075269, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 49170; Mature: 49170

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVREAALDTLMKIEQGGAYSTIAVNDTLKQKKVAPKDVGLYTELVYGTLSRKGTLDYIL
CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHH
KDRIRSPKKLDKFVLPLLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGHHLGTSKFVNGV
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
LRNVLREGFPDFSSLTDAERIAIEHSHPEWLVSDWIELYGVETAEAICRLNNEPAPVTIR
HHHHHHHCCCCHHHCCCHHHEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEE
VNRKRISVDEMMNRLADAGVMTSRSELSADGLVVESGNVHATPFIEEGLLSIQDESSMIV
ECCCEECHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEECCCHHHCCCEECCCCCEEE
ADALGVSKDDVILDACAAPGGKAMHTAERMQGGSLTALDLHPHKAKLIDQQAKRLHINGV
EHHCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHEEEECCE
TALALDARLAGERFEEESFDRILLDVPCSGLGVIRRKPDIKWTKDKAQLENLPKIQRQII
EEEEHHHHHHHHHHCHHHHCEEEEECCCCCCEEEECCCCCCCCCCHHHHHCCHHHHHHHH
DAVLPLLKPGGTLVYSTCTIDPSENETQADYMLSKGLVWDETLKGRLPQSVRPMMESDRA
HHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHCCCEECHHHHCCCCHHHHHHHHCCCC
ELKLLPTTFGTDGFYIAAFKKEV
CEEEEEEECCCCCEEEEEEECCC
>Mature Secondary Structure
MNVREAALDTLMKIEQGGAYSTIAVNDTLKQKKVAPKDVGLYTELVYGTLSRKGTLDYIL
CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHH
KDRIRSPKKLDKFVLPLLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGHHLGTSKFVNGV
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
LRNVLREGFPDFSSLTDAERIAIEHSHPEWLVSDWIELYGVETAEAICRLNNEPAPVTIR
HHHHHHHCCCCHHHCCCHHHEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEE
VNRKRISVDEMMNRLADAGVMTSRSELSADGLVVESGNVHATPFIEEGLLSIQDESSMIV
ECCCEECHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEECCCHHHCCCEECCCCCEEE
ADALGVSKDDVILDACAAPGGKAMHTAERMQGGSLTALDLHPHKAKLIDQQAKRLHINGV
EHHCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHEEEECCE
TALALDARLAGERFEEESFDRILLDVPCSGLGVIRRKPDIKWTKDKAQLENLPKIQRQII
EEEEHHHHHHHHHHCHHHHCEEEEECCCCCCEEEECCCCCCCCCCHHHHHCCHHHHHHHH
DAVLPLLKPGGTLVYSTCTIDPSENETQADYMLSKGLVWDETLKGRLPQSVRPMMESDRA
HHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHCCCEECHHHHCCCCHHHHHHHHCCCC
ELKLLPTTFGTDGFYIAAFKKEV
CEEEEEEECCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]