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The map label for this gene is ylmH [H]

Identifier: 229918558

GI number: 229918558

Start: 2807342

End: 2808112

Strand: Direct

Name: ylmH [H]

Synonym: EAT1b_2845

Alternate gene names: 229918558

Gene position: 2807342-2808112 (Clockwise)

Preceding gene: 229918557

Following gene: 229918559

Centisome position: 93.58

GC content: 47.08

Gene sequence:

>771_bases
ATGAGCGTCTATGACCATTATCGACCAAGTGAACGCGCGTTCGTGGAACAAGTGCTCGACTGGGTACAACAAGTGGAGAA
TAGTTATGTGTTGAAATTGACGGATTTTCTAGATCCACGTGAACAACAAATCGTCAAACAGCTCGTCGGGAAACAACTTG
TCATTCACGATGATGGCGGATTTGAAGGCGCGGAACGACGTCGATTGATTTTGGCGCCGGATTACTATGAACTCAATCCA
GATGATTTCGAGATTGAGGTCCGTCGAATCGAGTATCCGACAAAATTCGTGGACTTGACGCATCGACAAGTGACAGGGAC
ATTGCTGAACGCTGGACTGAAGCGCCAAAAGTTCGGTGACGTCGTTCTTGACGAGGAAATCGTACAATTTGCGACAACAC
GAGAAGCGGTCGGGTTCATCGAAATGAACCTCGAGCGTGTCGGAAAAGCAAAAGTCCGTATTTCCTCTGTGGCGAAAGAA
GAGATTCTCGTCGTTCCAAAAACGGAGTGGGTAGAAGGCTTTGGCATCGTGTCCTCGTTACGATTTGATACGGTTGCAAG
CGAGGTGCTCAACATCTCTCGGCAAAAAGCGCAGGCGCTCGTCAAACACGGCGACTGTAAAGTGAATCATAAAGTCATTG
AAGACGCGAGCTTCATTCTTGAGCCGGATGATCTTTTATCCGTTCGTGGATATGGTCGTATCAAATTGATGGAGATTCTC
GGATCGACCAAACGTGAAAAAATTAAAATCCAGTATGGCACCATACGTTGA

Upstream 100 bases:

>100_bases
CATCCCGCCGATTGGTGGCATGCTCGATATCTCCCCAATCGTCGCGTTGTTCGTGCTTCGCATGGCACAAGCCGGAATCG
CTGCGATCTTTGGGTGACGT

Downstream 100 bases:

>100_bases
ATTTAGGAGGAAAGTCGAATGGCGTTGACACCGATTGATATTCATAATAAAGAATTCTCTTCCCGTTTTCGTGGGTACGA
CATCGATGAGGTCAATGAAT

Product: RNA-binding S4 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSVYDHYRPSERAFVEQVLDWVQQVENSYVLKLTDFLDPREQQIVKQLVGKQLVIHDDGGFEGAERRRLILAPDYYELNP
DDFEIEVRRIEYPTKFVDLTHRQVTGTLLNAGLKRQKFGDVVLDEEIVQFATTREAVGFIEMNLERVGKAKVRISSVAKE
EILVVPKTEWVEGFGIVSSLRFDTVASEVLNISRQKAQALVKHGDCKVNHKVIEDASFILEPDDLLSVRGYGRIKLMEIL
GSTKREKIKIQYGTIR

Sequences:

>Translated_256_residues
MSVYDHYRPSERAFVEQVLDWVQQVENSYVLKLTDFLDPREQQIVKQLVGKQLVIHDDGGFEGAERRRLILAPDYYELNP
DDFEIEVRRIEYPTKFVDLTHRQVTGTLLNAGLKRQKFGDVVLDEEIVQFATTREAVGFIEMNLERVGKAKVRISSVAKE
EILVVPKTEWVEGFGIVSSLRFDTVASEVLNISRQKAQALVKHGDCKVNHKVIEDASFILEPDDLLSVRGYGRIKLMEIL
GSTKREKIKIQYGTIR
>Mature_255_residues
SVYDHYRPSERAFVEQVLDWVQQVENSYVLKLTDFLDPREQQIVKQLVGKQLVIHDDGGFEGAERRRLILAPDYYELNPD
DFEIEVRRIEYPTKFVDLTHRQVTGTLLNAGLKRQKFGDVVLDEEIVQFATTREAVGFIEMNLERVGKAKVRISSVAKEE
ILVVPKTEWVEGFGIVSSLRFDTVASEVLNISRQKAQALVKHGDCKVNHKVIEDASFILEPDDLLSVRGYGRIKLMEILG
STKREKIKIQYGTIR

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29408; Mature: 29277

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVYDHYRPSERAFVEQVLDWVQQVENSYVLKLTDFLDPREQQIVKQLVGKQLVIHDDGG
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHCCCHHHHHHHHHHCCEEEEECCCC
FEGAERRRLILAPDYYELNPDDFEIEVRRIEYPTKFVDLTHRQVTGTLLNAGLKRQKFGD
CCCCCCCEEEECCCCEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHCCC
VVLDEEIVQFATTREAVGFIEMNLERVGKAKVRISSVAKEEILVVPKTEWVEGFGIVSSL
CHHHHHHHHHHHHHHHHHHHEECHHHHCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH
RFDTVASEVLNISRQKAQALVKHGDCKVNHKVIEDASFILEPDDLLSVRGYGRIKLMEIL
HHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHCCCCEEECCHHHEEECCCCCEEHHHHH
GSTKREKIKIQYGTIR
CCCCCEEEEEEECCCC
>Mature Secondary Structure 
SVYDHYRPSERAFVEQVLDWVQQVENSYVLKLTDFLDPREQQIVKQLVGKQLVIHDDGG
CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHCCCHHHHHHHHHHCCEEEEECCCC
FEGAERRRLILAPDYYELNPDDFEIEVRRIEYPTKFVDLTHRQVTGTLLNAGLKRQKFGD
CCCCCCCEEEECCCCEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHCCC
VVLDEEIVQFATTREAVGFIEMNLERVGKAKVRISSVAKEEILVVPKTEWVEGFGIVSSL
CHHHHHHHHHHHHHHHHHHHEECHHHHCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH
RFDTVASEVLNISRQKAQALVKHGDCKVNHKVIEDASFILEPDDLLSVRGYGRIKLMEIL
HHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHCCCCEEECCHHHEEECCCCCEEHHHHH
GSTKREKIKIQYGTIR
CCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]