| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
Click here to switch to the map view.
The map label for this gene is 229918495
Identifier: 229918495
GI number: 229918495
Start: 2748396
End: 2749853
Strand: Direct
Name: 229918495
Synonym: EAT1b_2782
Alternate gene names: NA
Gene position: 2748396-2749853 (Clockwise)
Preceding gene: 229918494
Following gene: 229918498
Centisome position: 91.62
GC content: 46.43
Gene sequence:
>1458_bases ATGTCGAAGAAAAAGGGAAAGAAAGGGTGGCTGAAATGGGGAGCCGCAATCATTGCGGTCATTTTTCTCATCACGCTCGT TTATCATCAAGTCAAACCATTACCGGAAGGCGTGTCGAGACAATCTGAACCGTATCTCATCACAGATGACCAAATCGATT TTCTTCATGATTTGACCTATCAAGGGGAAGATACAGAGATTGTCGAACAGGAGATATTTAGTGAAGTTGAACGAGCGATA CGTGAGGCAAAAGAATATATCGTCATGGACTTTTTCTTATTCAATCCTTATTCGAATGAAGACCGACAATATCCGGACAT TACATCGCGCCTATCTTCAGTATTGCTTGAGCAAATGGAGCGGTACCCGGATTTGAAGGTCGTCTTCATCACGGATGACA TCAATACCACGTATAGCGGTCATGTTTCTGACCACTTTGATGTCCTAGAGGAAGCGGGAGTGGAGGTCGTATATACAAAC CTCGATGCTCTTCGTGACCCGAATATTTTATACTCCACGTTTTACCGAATGGCGCTTCAATGGTTTGGGGATAGTCAAGA CGGATGGCTACCGAATCCGATGGCCTCTTCGGCACCGGACATTACGGTTCGTGCTTATTTAAGGTTGCTCAACATCAAAG CGAACCATCGGAAAGTGATGGTCACCGAGAATGAAGGCTTTGTACTTTCCGCTAATCCACATGATGCCAGTGGATATCAC TCGAATGTCGGTGTCCATTTAAAAGGACCGATTTTAAAAGAAATCGTTGAAGGTGAGCAAGCGGTCGCGACGTTCTCGAA AGGGGATGCACGGCGCTTCCCAGATGATGAAGCGTTGTCGAAGATTGAAAATGCGCCGAGCGAGGCACCGATGGAGATTC GTTATGTCACGGAAGGGAAGATTCAAGAGTCGGTGCTCGATGCAATGAATGGGGCGGACGATGGGGACACCATTTGGATC GGAATGTTCTATTTGGCAGATCGGAATATTATCCAAGCAATCGAGGATGCCGCCGGGCGCGGGGTGAAGGTGAACTTGAT CCTCGATCCGAACACGAATGCCTTCGGTCGATCGAAATCAGGGTTACCGAACTTACCGGTGACGGCAGAACTGAACACCG TCAACCCGGAGCAAATCGAGATTCGCTGGTATGATGTCGGCAAGGAACAATATCATCCAAAAATCCTGTATGTGGATGGT GAAGAAAAGACAGTTGTCTTAGGTTCAGGGAACTATACGACCCGGAACATGAACGATTACAACCTAGAGGCAGACGTCGA AGTGACAGGAGATGTAGATACAGCCTTCTTTGATGAAGTGGACGAGTATTTTAATCGTCTATGGAACAATGAGAATGGCA CGTATACGGTAGCGTATGATGAGATTCAAACCGATCTCCCAATCGGAAAGTATATGATGTATTGGCTCCAAAAAGTCACA TGGACGATGACGTATTAA
Upstream 100 bases:
>100_bases AGACACCCAATGGTCCTGCCGATTATTATGGAAGTATGATCTGACGGGCTGTAGGAGACTACAGCTCGTTTTTTTCACCG CAAATGAGGAGGGGGAGCTT
Downstream 100 bases:
>100_bases AAAACAGCTATCCTCAAAATTTGGGGATAGCTGTTTTGACGTTAGTTCGTCTCGATTGGATTAAACTCATTCGTGTATTC GTATAAGAATTTTCCAGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 485; Mature: 484
Protein sequence:
>485_residues MSKKKGKKGWLKWGAAIIAVIFLITLVYHQVKPLPEGVSRQSEPYLITDDQIDFLHDLTYQGEDTEIVEQEIFSEVERAI REAKEYIVMDFFLFNPYSNEDRQYPDITSRLSSVLLEQMERYPDLKVVFITDDINTTYSGHVSDHFDVLEEAGVEVVYTN LDALRDPNILYSTFYRMALQWFGDSQDGWLPNPMASSAPDITVRAYLRLLNIKANHRKVMVTENEGFVLSANPHDASGYH SNVGVHLKGPILKEIVEGEQAVATFSKGDARRFPDDEALSKIENAPSEAPMEIRYVTEGKIQESVLDAMNGADDGDTIWI GMFYLADRNIIQAIEDAAGRGVKVNLILDPNTNAFGRSKSGLPNLPVTAELNTVNPEQIEIRWYDVGKEQYHPKILYVDG EEKTVVLGSGNYTTRNMNDYNLEADVEVTGDVDTAFFDEVDEYFNRLWNNENGTYTVAYDEIQTDLPIGKYMMYWLQKVT WTMTY
Sequences:
>Translated_485_residues MSKKKGKKGWLKWGAAIIAVIFLITLVYHQVKPLPEGVSRQSEPYLITDDQIDFLHDLTYQGEDTEIVEQEIFSEVERAI REAKEYIVMDFFLFNPYSNEDRQYPDITSRLSSVLLEQMERYPDLKVVFITDDINTTYSGHVSDHFDVLEEAGVEVVYTN LDALRDPNILYSTFYRMALQWFGDSQDGWLPNPMASSAPDITVRAYLRLLNIKANHRKVMVTENEGFVLSANPHDASGYH SNVGVHLKGPILKEIVEGEQAVATFSKGDARRFPDDEALSKIENAPSEAPMEIRYVTEGKIQESVLDAMNGADDGDTIWI GMFYLADRNIIQAIEDAAGRGVKVNLILDPNTNAFGRSKSGLPNLPVTAELNTVNPEQIEIRWYDVGKEQYHPKILYVDG EEKTVVLGSGNYTTRNMNDYNLEADVEVTGDVDTAFFDEVDEYFNRLWNNENGTYTVAYDEIQTDLPIGKYMMYWLQKVT WTMTY >Mature_484_residues SKKKGKKGWLKWGAAIIAVIFLITLVYHQVKPLPEGVSRQSEPYLITDDQIDFLHDLTYQGEDTEIVEQEIFSEVERAIR EAKEYIVMDFFLFNPYSNEDRQYPDITSRLSSVLLEQMERYPDLKVVFITDDINTTYSGHVSDHFDVLEEAGVEVVYTNL DALRDPNILYSTFYRMALQWFGDSQDGWLPNPMASSAPDITVRAYLRLLNIKANHRKVMVTENEGFVLSANPHDASGYHS NVGVHLKGPILKEIVEGEQAVATFSKGDARRFPDDEALSKIENAPSEAPMEIRYVTEGKIQESVLDAMNGADDGDTIWIG MFYLADRNIIQAIEDAAGRGVKVNLILDPNTNAFGRSKSGLPNLPVTAELNTVNPEQIEIRWYDVGKEQYHPKILYVDGE EKTVVLGSGNYTTRNMNDYNLEADVEVTGDVDTAFFDEVDEYFNRLWNNENGTYTVAYDEIQTDLPIGKYMMYWLQKVTW TMTY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55260; Mature: 55128
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKKGKKGWLKWGAAIIAVIFLITLVYHQVKPLPEGVSRQSEPYLITDDQIDFLHDLTY CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEECCCHHHHHHCCC QGEDTEIVEQEIFSEVERAIREAKEYIVMDFFLFNPYSNEDRQYPDITSRLSSVLLEQME CCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH RYPDLKVVFITDDINTTYSGHVSDHFDVLEEAGVEVVYTNLDALRDPNILYSTFYRMALQ HCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHHCCCCHHHHHHHHHHHH WFGDSQDGWLPNPMASSAPDITVRAYLRLLNIKANHRKVMVTENEGFVLSANPHDASGYH HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCC SNVGVHLKGPILKEIVEGEQAVATFSKGDARRFPDDEALSKIENAPSEAPMEIRYVTEGK CCCCEEECCHHHHHHHCCCHHEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCH IQESVLDAMNGADDGDTIWIGMFYLADRNIIQAIEDAAGRGVKVNLILDPNTNAFGRSKS HHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC GLPNLPVTAELNTVNPEQIEIRWYDVGKEQYHPKILYVDGEEKTVVLGSGNYTTRNMNDY CCCCCCEEEEECCCCCCEEEEEEEECCCHHCCCEEEEEECCCCEEEEECCCEEECCCCCC NLEADVEVTGDVDTAFFDEVDEYFNRLWNNENGTYTVAYDEIQTDLPIGKYMMYWLQKVT CEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH WTMTY EEECC >Mature Secondary Structure SKKKGKKGWLKWGAAIIAVIFLITLVYHQVKPLPEGVSRQSEPYLITDDQIDFLHDLTY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEECCCHHHHHHCCC QGEDTEIVEQEIFSEVERAIREAKEYIVMDFFLFNPYSNEDRQYPDITSRLSSVLLEQME CCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH RYPDLKVVFITDDINTTYSGHVSDHFDVLEEAGVEVVYTNLDALRDPNILYSTFYRMALQ HCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHHCCCCHHHHHHHHHHHH WFGDSQDGWLPNPMASSAPDITVRAYLRLLNIKANHRKVMVTENEGFVLSANPHDASGYH HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCC SNVGVHLKGPILKEIVEGEQAVATFSKGDARRFPDDEALSKIENAPSEAPMEIRYVTEGK CCCCEEECCHHHHHHHCCCHHEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCH IQESVLDAMNGADDGDTIWIGMFYLADRNIIQAIEDAAGRGVKVNLILDPNTNAFGRSKS HHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC GLPNLPVTAELNTVNPEQIEIRWYDVGKEQYHPKILYVDGEEKTVVLGSGNYTTRNMNDY CCCCCCEEEEECCCCCCEEEEEEEECCCHHCCCEEEEEECCCCEEEEECCCEEECCCCCC NLEADVEVTGDVDTAFFDEVDEYFNRLWNNENGTYTVAYDEIQTDLPIGKYMMYWLQKVT CEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH WTMTY EEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA