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The map label for this gene is ysxA [H]

Identifier: 229918383

GI number: 229918383

Start: 2638924

End: 2639553

Strand: Direct

Name: ysxA [H]

Synonym: EAT1b_2668

Alternate gene names: 229918383

Gene position: 2638924-2639553 (Clockwise)

Preceding gene: 229918382

Following gene: 229918384

Centisome position: 87.97

GC content: 54.6

Gene sequence:

>630_bases
ATGACCATGGTGCTTGACCGTAGTGTAGAGACCGCCATCGCCAGATTGCTTCAAATCGGAGGACGGGGCCCGGACCCGAT
GGAGACGGCTCGTCGTATCTCGGACGTCTACCCGACGTTACGGGCGCTGTCACAAGCGTCCGTTCACGATTTGTGCAAAA
TCGAAGGGATGACGAAGAAGAAGGCAGAGCAACTCCTCGCCGCATTCACAATCGGGATTCGATACGTCGAGGAACCGAAA
GCGAGTATGCCGACGATTCGTTCGCCGCAAGACGCCTATGAGTTGTTGCGAGATGAATTGAGACTGTTGAATCAGGAGCA
TTTCGTCTGTTTGTATTTGAATACGAAGAACCAACTGATTGCCCGGAAGACGCTCTTCGTCGGTGGTCTCAACTCGTCCA
TCGTGCACCCACGCGATGTGTTTCGTGAGGCGCTCAAGTTGTCGGCGGCGTGCTTTATCGCCGTGCACAATCATCCGAGC
GGGGACGCCACCCCGAGTCGGGAAGACATCGAAGTGTCTGAACGGTTGGTTGAAGCAGGCAATATCGTCGGCATCGCCTG
TCTCGACCACGTCATCATCGGGGAAGACCATTACGTCAGCATGAAGCAGCGGGGATATATGAATGGATAA

Upstream 100 bases:

>100_bases
TCTACAACGTCGTCGGCTTACCGATCCATCCGCTCGTCAAGACGCTCGACCGGCATGGGGTGACGCCTCGCTTCCTGTGA
ACTTGAAAGTAGGTGAAGGA

Downstream 100 bases:

>100_bases
GAAGTAGAAAGCAGGCATCGTGATGTCTGCTTTTTTGTGTTTACGAGAGTGCTGACACCTCATTAAATTTTGGATATAGT
TGGAAAATGATAAGTGGAGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTMVLDRSVETAIARLLQIGGRGPDPMETARRISDVYPTLRALSQASVHDLCKIEGMTKKKAEQLLAAFTIGIRYVEEPK
ASMPTIRSPQDAYELLRDELRLLNQEHFVCLYLNTKNQLIARKTLFVGGLNSSIVHPRDVFREALKLSAACFIAVHNHPS
GDATPSREDIEVSERLVEAGNIVGIACLDHVIIGEDHYVSMKQRGYMNG

Sequences:

>Translated_209_residues
MTMVLDRSVETAIARLLQIGGRGPDPMETARRISDVYPTLRALSQASVHDLCKIEGMTKKKAEQLLAAFTIGIRYVEEPK
ASMPTIRSPQDAYELLRDELRLLNQEHFVCLYLNTKNQLIARKTLFVGGLNSSIVHPRDVFREALKLSAACFIAVHNHPS
GDATPSREDIEVSERLVEAGNIVGIACLDHVIIGEDHYVSMKQRGYMNG
>Mature_208_residues
TMVLDRSVETAIARLLQIGGRGPDPMETARRISDVYPTLRALSQASVHDLCKIEGMTKKKAEQLLAAFTIGIRYVEEPKA
SMPTIRSPQDAYELLRDELRLLNQEHFVCLYLNTKNQLIARKTLFVGGLNSSIVHPRDVFREALKLSAACFIAVHNHPSG
DATPSREDIEVSERLVEAGNIVGIACLDHVIIGEDHYVSMKQRGYMNG

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=195, Percent_Identity=31.2820512820513, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1788997, Length=140, Percent_Identity=41.4285714285714, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788312, Length=134, Percent_Identity=41.7910447761194, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI2367100, Length=134, Percent_Identity=40.2985074626866, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466; PF00633 HHH [H]

EC number: NA

Molecular weight: Translated: 23287; Mature: 23156

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMVLDRSVETAIARLLQIGGRGPDPMETARRISDVYPTLRALSQASVHDLCKIEGMTKK
CCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
KAEQLLAAFTIGIRYVEEPKASMPTIRSPQDAYELLRDELRLLNQEHFVCLYLNTKNQLI
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
ARKTLFVGGLNSSIVHPRDVFREALKLSAACFIAVHNHPSGDATPSREDIEVSERLVEAG
HHHHHEEECCCCCCCCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC
NIVGIACLDHVIIGEDHYVSMKQRGYMNG
CEEEHHHHHHHHCCCCCEEHHHHCCCCCC
>Mature Secondary Structure 
TMVLDRSVETAIARLLQIGGRGPDPMETARRISDVYPTLRALSQASVHDLCKIEGMTKK
CEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
KAEQLLAAFTIGIRYVEEPKASMPTIRSPQDAYELLRDELRLLNQEHFVCLYLNTKNQLI
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
ARKTLFVGGLNSSIVHPRDVFREALKLSAACFIAVHNHPSGDATPSREDIEVSERLVEAG
HHHHHEEECCCCCCCCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC
NIVGIACLDHVIIGEDHYVSMKQRGYMNG
CEEEHHHHHHHHCCCCCEEHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1400224; 8387996; 9384377; 1400225 [H]