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The map label for this gene is ydiF [H]

Identifier: 229918273

GI number: 229918273

Start: 2516925

End: 2518622

Strand: Direct

Name: ydiF [H]

Synonym: EAT1b_2556

Alternate gene names: 229918273

Gene position: 2516925-2518622 (Clockwise)

Preceding gene: 229918269

Following gene: 229918274

Centisome position: 83.9

GC content: 51.71

Gene sequence:

>1698_bases
ATGTTAGCAGTAAAACAAGTCCGGTTTGACTATGACCGGAAACCATTATTTGACGCGGTCTCGTTCGAGGTCACGGCTGG
AGAGCGTGCCGTATTATTCGGACTGAACGGGAGCGGGAAGACGACGCTCTTCCGACTCGTGACCGGGGAGTTGACCCCGC
AAGCCGGGAAGATTGAATGTCTTGGCGAGGTCGGACTCGTCCGACAGACGATCGAATCGACAGACATGACCGTACTTGAG
TGGACGATGCGCAGTGATCCAGAACGATATGCGCTCTATGAAGATGTTTCTTCTGGTGACGAGATGCGTGTCATGCGGTC
CTATGAACGGGCGCTCGCACTCGATGTGTACAACTTGGAACAAGAGGCGACAAGAGCATTGACTCGACTTGGGCTGGAGG
AGCACCTCTTCCGAAACATTAACGAGCTAAGTGGAGGCGAGAAGACGCGAGCTCAGCTCTCAACACTGACGATGAAGCGG
GTGGACCTCGTCCTGCTCGACGAACCGACGAACCATCTCGATCTCGAGTCGATCGACTGGCTCACGAAGTGGTTGAATCA
GTTCAAGGGGACGGTGCTCATCATCTCACACGACCGTCAACTGATGGACGATGTCGCAACGACCATTCTTGAACTGTCAG
GCGGTCTAGTCACTCGATACCCGGGAAATTATACGGCGTATAAGCATCAAAAAGAAGAAGAACGCGTGCGTGATGAGCGA
GCCCATGCTCGATACGAGAACCGAAAGGCAGAACTGCTCGAGATGATTGCCCAATACAAAGGGTGGCATTTGAAGGCGAA
AGCGACAGCGAGTGTCCGCAGTCCGGGAGCGCAAAAAGGAGCGGCCAATCTCGCCATCAAAATGAAGGCAAGAGAACAGA
AGTTAAGGCAGCTCGAAGACAATCGTCCACAAAAACCAAAAGAGGAGAAATCCATCTCCGTCCGTTTTGCAGCGGATGAG
CTCGAAGCGAAGACGTGGCTGACGTGTGAGGATGTGACGTTTGGATACGACAATCCGTTCTATGAACCGTTTTCCTTCTC
GATGAATAAAGGAGAGCGGATCTCGATCACCGGACCGAACGGAAGCGGAAAGACGACGTTATTAAACGTGCTGATCGGTG
AACGAGCGCCGCATTCGGGTGTGATCAAGCGACATCCTCGTCTGAAGATCGGATATTTCTCTCAAACGCTCGAGCGTCTC
CCGGAGACCGGGACGTTACTTGAGGCGTTACTCGCCAATAGTGAGATCGGAGAGACGGAGGCGCGAACGTTGCTCGCTCA
CTTCTTGTTCCGGCGAGATGAAGTGCACCGACCGATTACCGAGGCGAGCATGGGAGAAAAGTGTCGAATCGCCTTTCTCA
TCTTGTATTTCTCGGATGCCCATCTGTTGGCATTAGATGAACCGACGAACTATTTGGATGTGGCGACACGCGAACAAATC
GAGGCGGCGTTGTCCGTCTATCCGGGTGGATTATTGTTGATTTCCCACGACCGCTACTTTCATCGTTTGACTTCGCGCAC
GATTGAATTAGGAGAACATATTGTCATACGTGAGAACGATGACACCGGTAAGTCGGTCGATGTCGAACAGATGGTCCGAA
CGATGGACGAATTGACAAAAGATGAATTGAAATTTTTTGATGAAGCAGGAAACCTCCTACCATTTGACGAAACGAGTGAA
ATGAATCGAATCGAGTAG

Upstream 100 bases:

>100_bases
CTCGTTTTCCTCTTTGAACGGATTCCTTCACACCACCGCTTTGAAGCGGATGGTGTTTTTTGTTTCATCGCGTATCGGAT
TCATAAGCGAGGTGAAACAG

Downstream 100 bases:

>100_bases
GAGTGAAGAACATGAATGGAGGAAGATTGTCGCGTGCGACGACGCGGAAGCGTAAACGCGTGTTCCGCATCACGACGGCA
TTGGCACTAGTGCTCGCCTT

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MLAVKQVRFDYDRKPLFDAVSFEVTAGERAVLFGLNGSGKTTLFRLVTGELTPQAGKIECLGEVGLVRQTIESTDMTVLE
WTMRSDPERYALYEDVSSGDEMRVMRSYERALALDVYNLEQEATRALTRLGLEEHLFRNINELSGGEKTRAQLSTLTMKR
VDLVLLDEPTNHLDLESIDWLTKWLNQFKGTVLIISHDRQLMDDVATTILELSGGLVTRYPGNYTAYKHQKEEERVRDER
AHARYENRKAELLEMIAQYKGWHLKAKATASVRSPGAQKGAANLAIKMKAREQKLRQLEDNRPQKPKEEKSISVRFAADE
LEAKTWLTCEDVTFGYDNPFYEPFSFSMNKGERISITGPNGSGKTTLLNVLIGERAPHSGVIKRHPRLKIGYFSQTLERL
PETGTLLEALLANSEIGETEARTLLAHFLFRRDEVHRPITEASMGEKCRIAFLILYFSDAHLLALDEPTNYLDVATREQI
EAALSVYPGGLLLISHDRYFHRLTSRTIELGEHIVIRENDDTGKSVDVEQMVRTMDELTKDELKFFDEAGNLLPFDETSE
MNRIE

Sequences:

>Translated_565_residues
MLAVKQVRFDYDRKPLFDAVSFEVTAGERAVLFGLNGSGKTTLFRLVTGELTPQAGKIECLGEVGLVRQTIESTDMTVLE
WTMRSDPERYALYEDVSSGDEMRVMRSYERALALDVYNLEQEATRALTRLGLEEHLFRNINELSGGEKTRAQLSTLTMKR
VDLVLLDEPTNHLDLESIDWLTKWLNQFKGTVLIISHDRQLMDDVATTILELSGGLVTRYPGNYTAYKHQKEEERVRDER
AHARYENRKAELLEMIAQYKGWHLKAKATASVRSPGAQKGAANLAIKMKAREQKLRQLEDNRPQKPKEEKSISVRFAADE
LEAKTWLTCEDVTFGYDNPFYEPFSFSMNKGERISITGPNGSGKTTLLNVLIGERAPHSGVIKRHPRLKIGYFSQTLERL
PETGTLLEALLANSEIGETEARTLLAHFLFRRDEVHRPITEASMGEKCRIAFLILYFSDAHLLALDEPTNYLDVATREQI
EAALSVYPGGLLLISHDRYFHRLTSRTIELGEHIVIRENDDTGKSVDVEQMVRTMDELTKDELKFFDEAGNLLPFDETSE
MNRIE
>Mature_565_residues
MLAVKQVRFDYDRKPLFDAVSFEVTAGERAVLFGLNGSGKTTLFRLVTGELTPQAGKIECLGEVGLVRQTIESTDMTVLE
WTMRSDPERYALYEDVSSGDEMRVMRSYERALALDVYNLEQEATRALTRLGLEEHLFRNINELSGGEKTRAQLSTLTMKR
VDLVLLDEPTNHLDLESIDWLTKWLNQFKGTVLIISHDRQLMDDVATTILELSGGLVTRYPGNYTAYKHQKEEERVRDER
AHARYENRKAELLEMIAQYKGWHLKAKATASVRSPGAQKGAANLAIKMKAREQKLRQLEDNRPQKPKEEKSISVRFAADE
LEAKTWLTCEDVTFGYDNPFYEPFSFSMNKGERISITGPNGSGKTTLLNVLIGERAPHSGVIKRHPRLKIGYFSQTLERL
PETGTLLEALLANSEIGETEARTLLAHFLFRRDEVHRPITEASMGEKCRIAFLILYFSDAHLLALDEPTNYLDVATREQI
EAALSVYPGGLLLISHDRYFHRLTSRTIELGEHIVIRENDDTGKSVDVEQMVRTMDELTKDELKFFDEAGNLLPFDETSE
MNRIE

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI10947137, Length=496, Percent_Identity=29.8387096774194, Blast_Score=194, Evalue=2e-49,
Organism=Homo sapiens, GI27881506, Length=496, Percent_Identity=29.8387096774194, Blast_Score=194, Evalue=3e-49,
Organism=Homo sapiens, GI148612853, Length=517, Percent_Identity=29.2069632495164, Blast_Score=185, Evalue=9e-47,
Organism=Homo sapiens, GI69354671, Length=503, Percent_Identity=30.6163021868787, Blast_Score=182, Evalue=8e-46,
Organism=Homo sapiens, GI10947135, Length=503, Percent_Identity=30.6163021868787, Blast_Score=182, Evalue=8e-46,
Organism=Escherichia coli, GI1787041, Length=536, Percent_Identity=30.7835820895522, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI1789751, Length=506, Percent_Identity=30.8300395256917, Blast_Score=223, Evalue=3e-59,
Organism=Escherichia coli, GI2367384, Length=514, Percent_Identity=31.9066147859922, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI1787182, Length=520, Percent_Identity=29.2307692307692, Blast_Score=197, Evalue=2e-51,
Organism=Escherichia coli, GI1786563, Length=240, Percent_Identity=28.75, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=30.9644670050761, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081709, Length=209, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788761, Length=225, Percent_Identity=25.7777777777778, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1786345, Length=219, Percent_Identity=26.9406392694064, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786253, Length=214, Percent_Identity=26.6355140186916, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788053, Length=206, Percent_Identity=30.0970873786408, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1789873, Length=229, Percent_Identity=28.82096069869, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1787105, Length=232, Percent_Identity=26.2931034482759, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788897, Length=209, Percent_Identity=25.8373205741627, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788225, Length=251, Percent_Identity=25.4980079681275, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=509, Percent_Identity=29.8624754420432, Blast_Score=203, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17559834, Length=512, Percent_Identity=29.8828125, Blast_Score=196, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI17553372, Length=533, Percent_Identity=28.8930581613508, Blast_Score=179, Evalue=4e-45,
Organism=Saccharomyces cerevisiae, GI6320874, Length=520, Percent_Identity=27.8846153846154, Blast_Score=197, Evalue=4e-51,
Organism=Saccharomyces cerevisiae, GI6321121, Length=522, Percent_Identity=28.3524904214559, Blast_Score=176, Evalue=6e-45,
Organism=Saccharomyces cerevisiae, GI6325030, Length=389, Percent_Identity=24.6786632390745, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6324314, Length=389, Percent_Identity=25.4498714652956, Blast_Score=114, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=389, Percent_Identity=24.4215938303342, Blast_Score=110, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24642252, Length=500, Percent_Identity=30, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI18859989, Length=500, Percent_Identity=30, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI24641342, Length=524, Percent_Identity=29.7709923664122, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24666836, Length=531, Percent_Identity=27.4952919020716, Blast_Score=184, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 64359; Mature: 64359

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAVKQVRFDYDRKPLFDAVSFEVTAGERAVLFGLNGSGKTTLFRLVTGELTPQAGKIEC
CCCCCCHHCCCCCCCCHHHEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCCCCCEEE
LGEVGLVRQTIESTDMTVLEWTMRSDPERYALYEDVSSGDEMRVMRSYERALALDVYNLE
HHHHHHHHHHHHCCCCEEEEEECCCCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
QEATRALTRLGLEEHLFRNINELSGGEKTRAQLSTLTMKRVDLVLLDEPTNHLDLESIDW
HHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHH
LTKWLNQFKGTVLIISHDRQLMDDVATTILELSGGLVTRYPGNYTAYKHQKEEERVRDER
HHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCCCHHCCCHHHHHHHHHH
AHARYENRKAELLEMIAQYKGWHLKAKATASVRSPGAQKGAANLAIKMKAREQKLRQLED
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHC
NRPQKPKEEKSISVRFAADELEAKTWLTCEDVTFGYDNPFYEPFSFSMNKGERISITGPN
CCCCCCCCCCCEEEEEEHHHHCCCEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEECCC
GSGKTTLLNVLIGERAPHSGVIKRHPRLKIGYFSQTLERLPETGTLLEALLANSEIGETE
CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHCCCCCCHHH
ARTLLAHFLFRRDEVHRPITEASMGEKCRIAFLILYFSDAHLLALDEPTNYLDVATREQI
HHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEEEEECCCEEEEECCCCCCCHHHHHHHH
EAALSVYPGGLLLISHDRYFHRLTSRTIELGEHIVIRENDDTGKSVDVEQMVRTMDELTK
HHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
DELKFFDEAGNLLPFDETSEMNRIE
HHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLAVKQVRFDYDRKPLFDAVSFEVTAGERAVLFGLNGSGKTTLFRLVTGELTPQAGKIEC
CCCCCCHHCCCCCCCCHHHEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCCCCCEEE
LGEVGLVRQTIESTDMTVLEWTMRSDPERYALYEDVSSGDEMRVMRSYERALALDVYNLE
HHHHHHHHHHHHCCCCEEEEEECCCCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
QEATRALTRLGLEEHLFRNINELSGGEKTRAQLSTLTMKRVDLVLLDEPTNHLDLESIDW
HHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHH
LTKWLNQFKGTVLIISHDRQLMDDVATTILELSGGLVTRYPGNYTAYKHQKEEERVRDER
HHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCCCHHCCCHHHHHHHHHH
AHARYENRKAELLEMIAQYKGWHLKAKATASVRSPGAQKGAANLAIKMKAREQKLRQLED
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHC
NRPQKPKEEKSISVRFAADELEAKTWLTCEDVTFGYDNPFYEPFSFSMNKGERISITGPN
CCCCCCCCCCCEEEEEEHHHHCCCEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEECCC
GSGKTTLLNVLIGERAPHSGVIKRHPRLKIGYFSQTLERLPETGTLLEALLANSEIGETE
CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHCCCCCCHHH
ARTLLAHFLFRRDEVHRPITEASMGEKCRIAFLILYFSDAHLLALDEPTNYLDVATREQI
HHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEEEEECCCEEEEECCCCCCCHHHHHHHH
EAALSVYPGGLLLISHDRYFHRLTSRTIELGEHIVIRENDDTGKSVDVEQMVRTMDELTK
HHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
DELKFFDEAGNLLPFDETSEMNRIE
HHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]