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The map label for this gene is psd [H]

Identifier: 229918233

GI number: 229918233

Start: 2478896

End: 2479675

Strand: Direct

Name: psd [H]

Synonym: EAT1b_2514

Alternate gene names: 229918233

Gene position: 2478896-2479675 (Clockwise)

Preceding gene: 229918232

Following gene: 229918234

Centisome position: 82.63

GC content: 52.05

Gene sequence:

>780_bases
ATGAAGCGTCGTTTCTACCAAACGTTATTTGAGCTGAATGCCTCGCCTTGGATCGCCACACGCCTTAAGCGTTTCGCAGA
ATCAAATGTGAGTCGTCACTTGATTCCGTCGTTTGCAAAAGTATATGACATTGCGGTAGAAGAGGCGGAGCAACCGCTTG
CTGCCTATCCATCATTGCATGCGTTCTTTACCCGTCACTTGAAGCCGGGAGCACGTACGATTGATGAGTCGTCCGATACC
CTCGTATCACCGTGTGATGGCAAGCTATCGGTCATCGAATCGATTTCAGAAGACAGTCGTTTCAAGGTGAAAGGTCAGTC
GTATACGCTTGCGGAGTTGCTCGGTTCTCAACAAGAAGCAAGACGTTATGCAGGTGGGACGGTCGTCGTCCTCTATCTTA
GTCCGCGTGATTATCACCGCGTCCACACGCCGCTCTCTGGTCGTGTGCTCAGTCACTATGAGCTCGGGGACCGTTCGGCA
CCGGTAAATGAAATCGGATTGACGGAGACGGTTCGACCGCTCTCACGCAACTACCGTCGCGTGACGCGCTTTGACAGCCC
AGCCGGCACGTATGAACATATCATGGTCGGTGCCTTGAACGTCAACACGATTGAGTGGACGCTCGAAGGAGACCAGGCGG
TCAAAGGAGAAGAGGTGGGATACTTTTCGTTCGGTTCGACCGTCGTCCTTTGTTTTGAGAAGGATACGATCCAAATGGAC
CGTGAAAAGATCGGTCCGGTTCGACTCGGTGAAGTCATCGGGACAATCAAATCCAACTAA

Upstream 100 bases:

>100_bases
TCATCCGCTTTGAGGATGGAAAAGAAGTCGGTCGCATTGAAGGAGCGGTCTCTGAACAACAATATGAGACGTTCTTTAAA
AATGAGGAGGCCAAAGAGGA

Downstream 100 bases:

>100_bases
TTTTGTGTCAATTTTCTTCCGACCGAACGATAGACTAGTCGTTTGGTCGGTTTTCGTTTACCATAGAAGGGATATCAATA
CTTGTATAAGTAGTTGAATC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKRRFYQTLFELNASPWIATRLKRFAESNVSRHLIPSFAKVYDIAVEEAEQPLAAYPSLHAFFTRHLKPGARTIDESSDT
LVSPCDGKLSVIESISEDSRFKVKGQSYTLAELLGSQQEARRYAGGTVVVLYLSPRDYHRVHTPLSGRVLSHYELGDRSA
PVNEIGLTETVRPLSRNYRRVTRFDSPAGTYEHIMVGALNVNTIEWTLEGDQAVKGEEVGYFSFGSTVVLCFEKDTIQMD
REKIGPVRLGEVIGTIKSN

Sequences:

>Translated_259_residues
MKRRFYQTLFELNASPWIATRLKRFAESNVSRHLIPSFAKVYDIAVEEAEQPLAAYPSLHAFFTRHLKPGARTIDESSDT
LVSPCDGKLSVIESISEDSRFKVKGQSYTLAELLGSQQEARRYAGGTVVVLYLSPRDYHRVHTPLSGRVLSHYELGDRSA
PVNEIGLTETVRPLSRNYRRVTRFDSPAGTYEHIMVGALNVNTIEWTLEGDQAVKGEEVGYFSFGSTVVLCFEKDTIQMD
REKIGPVRLGEVIGTIKSN
>Mature_259_residues
MKRRFYQTLFELNASPWIATRLKRFAESNVSRHLIPSFAKVYDIAVEEAEQPLAAYPSLHAFFTRHLKPGARTIDESSDT
LVSPCDGKLSVIESISEDSRFKVKGQSYTLAELLGSQQEARRYAGGTVVVLYLSPRDYHRVHTPLSGRVLSHYELGDRSA
PVNEIGLTETVRPLSRNYRRVTRFDSPAGTYEHIMVGALNVNTIEWTLEGDQAVKGEEVGYFSFGSTVVLCFEKDTIQMD
REKIGPVRLGEVIGTIKSN

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790604, Length=253, Percent_Identity=34.3873517786561, Blast_Score=121, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71980843, Length=257, Percent_Identity=30.7392996108949, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71980840, Length=257, Percent_Identity=30.7392996108949, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321609, Length=245, Percent_Identity=28.1632653061224, Blast_Score=95, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24649526, Length=275, Percent_Identity=29.4545454545455, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24649528, Length=275, Percent_Identity=29.4545454545455, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24649524, Length=275, Percent_Identity=29.4545454545455, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 29104; Mature: 29104

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRFYQTLFELNASPWIATRLKRFAESNVSRHLIPSFAKVYDIAVEEAEQPLAAYPSLH
CCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCHHH
AFFTRHLKPGARTIDESSDTLVSPCDGKLSVIESISEDSRFKVKGQSYTLAELLGSQQEA
HHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCCEEEECCCCEEHHHHHCCHHHH
RRYAGGTVVVLYLSPRDYHRVHTPLSGRVLSHYELGDRSAPVNEIGLTETVRPLSRNYRR
HHHCCCEEEEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCHHCCCHHHHHHHHHHHHH
VTRFDSPAGTYEHIMVGALNVNTIEWTLEGDQAVKGEEVGYFSFGSTVVLCFEKDTIQMD
HHCCCCCCCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEECCCEEEEEEECCCHHHH
REKIGPVRLGEVIGTIKSN
HHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKRRFYQTLFELNASPWIATRLKRFAESNVSRHLIPSFAKVYDIAVEEAEQPLAAYPSLH
CCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCHHH
AFFTRHLKPGARTIDESSDTLVSPCDGKLSVIESISEDSRFKVKGQSYTLAELLGSQQEA
HHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCCEEEECCCCEEHHHHHCCHHHH
RRYAGGTVVVLYLSPRDYHRVHTPLSGRVLSHYELGDRSAPVNEIGLTETVRPLSRNYRR
HHHCCCEEEEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCHHCCCHHHHHHHHHHHHH
VTRFDSPAGTYEHIMVGALNVNTIEWTLEGDQAVKGEEVGYFSFGSTVVLCFEKDTIQMD
HHCCCCCCCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEECCCEEEEEEECCCHHHH
REKIGPVRLGEVIGTIKSN
HHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]