Click here to switch to the map view.

The map label for this gene is ycjC [C]

Identifier: 229918124

GI number: 229918124

Start: 2356113

End: 2356652

Strand: Direct

Name: ycjC [C]

Synonym: EAT1b_2404

Alternate gene names: 229918124

Gene position: 2356113-2356652 (Clockwise)

Preceding gene: 229918123

Following gene: 229918125

Centisome position: 78.54

GC content: 43.15

Gene sequence:

>540_bases
TTGGAAGTAGGTCAAAACATTAAGCGGCTCCGGATCAAAAAAGGATTGACCCAAGAGGAGTTGGCGGAACGTACAGATTT
GAGTAAAGGATACATTTCTCAAATTGAGCGGGATTTAAGCTCTCCCTCACTAGAAACGTTATTCGATTTATTGAATGTCC
TCGGGAGTTCCCCGAAAGAGTTTTTCGATGAAGAGTTGAATCAAAAAGTGGTGTACACCGTTGACGATCGCACCATCTAT
ACAGATGAAGAACGCAAATATCGGACAGAATGGCTCATCCCGGAATCGAATGAAAAAGAGATGGAGCCGATCCTAGTCAC
ATTTTTCAAACATGGAGAGTTCAAACAATATGAGCCTTCACGTTCGGAGACGCTCGTATACGTCTTGTCCGGCAAAATTG
CCTTGAAATTAGGGAACCACACATATTTTGCCAAGACAGGGGAAACCCTTTATTATGTCGCCTCAGATTCGCATCAACTC
GTCAACGATAACGATGGAGAGAGTGAATGTCTCATCGTCGCGACCCATTCATATTTATAA

Upstream 100 bases:

>100_bases
TATAATGAAGGTCGCTAATAGTTTGTTTTAAAGTATAGTATAGATAAACTTTCTTTAGTTGAACTCATGTTTCACTAAAC
AAAAAGGAGGCGTTCAGTCG

Downstream 100 bases:

>100_bases
GTCAACAGAGGAGGAAACAGCATGAATGCAGAGACAATTATTCGTTTTGACCACGTGTCAAAGCGTTACGACGACACAGT
CGTCCTTGAAGATATCAGTT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Cro/CI Family; Cupin 2 Domain-Containing Protein; Cupin 2 Conserved Barrel Domain Protein; Cro/CI Family Transcriptional Regulator; Transcription Regulator; Cupin 2 Conserved Barrel Domain-Containing Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator MerR Family; Helix-Turn-Helix Transcriptional Regulator PuuR; HTH-Type Transcriptional Regulator; MerR Family Transcriptional Regulator; Transcriptional Regulator Cro/CI Family Protein; Transcriptional Regulator Xre Family; Transcriptional Regulator XRE; XRE Family-Like Protein; HTH-Type Transcriptional Regulator YdcN; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Cupin/Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MEVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKEFFDEELNQKVVYTVDDRTIY
TDEERKYRTEWLIPESNEKEMEPILVTFFKHGEFKQYEPSRSETLVYVLSGKIALKLGNHTYFAKTGETLYYVASDSHQL
VNDNDGESECLIVATHSYL

Sequences:

>Translated_179_residues
MEVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKEFFDEELNQKVVYTVDDRTIY
TDEERKYRTEWLIPESNEKEMEPILVTFFKHGEFKQYEPSRSETLVYVLSGKIALKLGNHTYFAKTGETLYYVASDSHQL
VNDNDGESECLIVATHSYL
>Mature_179_residues
MEVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKEFFDEELNQKVVYTVDDRTIY
TDEERKYRTEWLIPESNEKEMEPILVTFFKHGEFKQYEPSRSETLVYVLSGKIALKLGNHTYFAKTGETLYYVASDSHQL
VNDNDGESECLIVATHSYL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20715; Mature: 20715

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKE
CCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH
FFDEELNQKVVYTVDDRTIYTDEERKYRTEWLIPESNEKEMEPILVTFFKHGEFKQYEPS
HHHHHCCCEEEEEECCCEEEECCCHHEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
RSETLVYVLSGKIALKLGNHTYFAKTGETLYYVASDSHQLVNDNDGESECLIVATHSYL
CCCEEEEEEECEEEEEECCEEEEEECCCEEEEEECCCCEECCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MEVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKE
CCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH
FFDEELNQKVVYTVDDRTIYTDEERKYRTEWLIPESNEKEMEPILVTFFKHGEFKQYEPS
HHHHHCCCEEEEEECCCEEEECCCHHEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
RSETLVYVLSGKIALKLGNHTYFAKTGETLYYVASDSHQLVNDNDGESECLIVATHSYL
CCCEEEEEEECEEEEEECCEEEEEECCCEEEEEECCCCEECCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA