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The map label for this gene is rtcB [H]

Identifier: 229918121

GI number: 229918121

Start: 2354135

End: 2355313

Strand: Direct

Name: rtcB [H]

Synonym: EAT1b_2401

Alternate gene names: 229918121

Gene position: 2354135-2355313 (Clockwise)

Preceding gene: 229918120

Following gene: 229918122

Centisome position: 78.47

GC content: 50.21

Gene sequence:

>1179_bases
ATGGAAATCAAGGGGAAATATAACCGCGCCAAAGTGTTCAACGAACGAATCGATGATATGACGCGGAATCAAATTGAAAC
ATTGCTCGACCAACCGTTCACACAAGGGGCATCGATTCGGATCATGCCGGACATGCATGCGGGGAAAGGGTCGGTCGTTG
GGACGACGATGACGATTCAAGACAAAGTCGTGCCAAACCTGGTCGGTGTCGATTTAGGGTGTGGGATGCTTTGTACAGAA
ATCAAAGCCAAACGAATCGATTTTCAACGACTCGACGACCTCATTCGTGAACTCGTACCGAGTGGAATGAACATTCGGGA
GAAAGTTCACCCATACGCATCTGAACTTCCACTAGAAGAGGTGCGAGCGCCGTATAAACTCGACCGAGCCTTGCGCTCGG
TCGGGTCGCTCGGCTCGGGGAACCACTTTATTGAAGTGAACCGAGATGACTCGGGACGTACGTTTCTCGTCATTCATTCC
GGTTCGCGCCATCTTGGGGTGCAGATTGCCGATCACTATCAGGAGCGAGCGATTCAACACATGATGGACACACATGATGT
AAAGGAAGAAATTGAGCGTTTGAAAGCTGCGGGTCGACAACAAGACATCTCGGCTTACCTGGAAACAGAGCGGGCGTCAC
GAAAACCATTTCGAGACCTGGCTTATGTGGAGGGAGCGGATATGGACGATTACATGCATGACGTGCGCATCGCTCAACAA
TATGCGGCGGCGAACCGTCGTGCGATGACGGATGTGATCGTCGAAGCGATGAATTGGAACATCGTCGATCAATTCGATAC
CGTCCATAACTATATCGACCATGATGCGATGATCCTGCGAAAAGGAGCCATCTCCGCACAAGAAGGAGAACGAGTCATCA
TTCCAATGAACATGCGGGACGGTTCGCTCATCTGTACGGGGAAAGGGAATCCAGATTGGAATTTCTCGGGTCCACACGGC
GCAGGTCGGATCATGTCTCGGTCGGCCGCACGGAAACGCGTCGATTTCAAAGAATTCAAACGTTCGATGGAAGGTGTCTG
GTCGACATCGGTTCGCCCATCGACAATCGATGAATCACCATTTGTGTATAAGTCGATGAAAGAAATTGTTCGTTATATCG
AACCGGCCGTTCAAATCGATCAAATCATCAAGCCACTTTACAACTTCAAGGCGAACTGA

Upstream 100 bases:

>100_bases
TGAGCGAGGCAACCACCAGTCACTCATCGAGTATGGCGGTGTCTATGCCCGAATGCATGAATTACAGAGTAAACAACAAG
CCATCAGTTAAGGAGGTCAC

Downstream 100 bases:

>100_bases
GTCACGTACTCAGTCTCGTCTTTTTCTTTTTTCGTAAAATCTGATACGCTTACATCGAGGTGAACGATATGGAAAAGCGG
TTAAGTGACTTATCGAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MEIKGKYNRAKVFNERIDDMTRNQIETLLDQPFTQGASIRIMPDMHAGKGSVVGTTMTIQDKVVPNLVGVDLGCGMLCTE
IKAKRIDFQRLDDLIRELVPSGMNIREKVHPYASELPLEEVRAPYKLDRALRSVGSLGSGNHFIEVNRDDSGRTFLVIHS
GSRHLGVQIADHYQERAIQHMMDTHDVKEEIERLKAAGRQQDISAYLETERASRKPFRDLAYVEGADMDDYMHDVRIAQQ
YAAANRRAMTDVIVEAMNWNIVDQFDTVHNYIDHDAMILRKGAISAQEGERVIIPMNMRDGSLICTGKGNPDWNFSGPHG
AGRIMSRSAARKRVDFKEFKRSMEGVWSTSVRPSTIDESPFVYKSMKEIVRYIEPAVQIDQIIKPLYNFKAN

Sequences:

>Translated_392_residues
MEIKGKYNRAKVFNERIDDMTRNQIETLLDQPFTQGASIRIMPDMHAGKGSVVGTTMTIQDKVVPNLVGVDLGCGMLCTE
IKAKRIDFQRLDDLIRELVPSGMNIREKVHPYASELPLEEVRAPYKLDRALRSVGSLGSGNHFIEVNRDDSGRTFLVIHS
GSRHLGVQIADHYQERAIQHMMDTHDVKEEIERLKAAGRQQDISAYLETERASRKPFRDLAYVEGADMDDYMHDVRIAQQ
YAAANRRAMTDVIVEAMNWNIVDQFDTVHNYIDHDAMILRKGAISAQEGERVIIPMNMRDGSLICTGKGNPDWNFSGPHG
AGRIMSRSAARKRVDFKEFKRSMEGVWSTSVRPSTIDESPFVYKSMKEIVRYIEPAVQIDQIIKPLYNFKAN
>Mature_392_residues
MEIKGKYNRAKVFNERIDDMTRNQIETLLDQPFTQGASIRIMPDMHAGKGSVVGTTMTIQDKVVPNLVGVDLGCGMLCTE
IKAKRIDFQRLDDLIRELVPSGMNIREKVHPYASELPLEEVRAPYKLDRALRSVGSLGSGNHFIEVNRDDSGRTFLVIHS
GSRHLGVQIADHYQERAIQHMMDTHDVKEEIERLKAAGRQQDISAYLETERASRKPFRDLAYVEGADMDDYMHDVRIAQQ
YAAANRRAMTDVIVEAMNWNIVDQFDTVHNYIDHDAMILRKGAISAQEGERVIIPMNMRDGSLICTGKGNPDWNFSGPHG
AGRIMSRSAARKRVDFKEFKRSMEGVWSTSVRPSTIDESPFVYKSMKEIVRYIEPAVQIDQIIKPLYNFKAN

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Escherichia coli, GI2367224, Length=390, Percent_Identity=32.8205128205128, Blast_Score=155, Evalue=6e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 44560; Mature: 44560

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKGKYNRAKVFNERIDDMTRNQIETLLDQPFTQGASIRIMPDMHAGKGSVVGTTMTIQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEEEC
DKVVPNLVGVDLGCGMLCTEIKAKRIDFQRLDDLIRELVPSGMNIREKVHPYASELPLEE
HHHCCHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCHHH
VRAPYKLDRALRSVGSLGSGNHFIEVNRDDSGRTFLVIHSGSRHLGVQIADHYQERAIQH
HCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
MMDTHDVKEEIERLKAAGRQQDISAYLETERASRKPFRDLAYVEGADMDDYMHDVRIAQQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHH
YAAANRRAMTDVIVEAMNWNIVDQFDTVHNYIDHDAMILRKGAISAQEGERVIIPMNMRD
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCC
GSLICTGKGNPDWNFSGPHGAGRIMSRSAARKRVDFKEFKRSMEGVWSTSVRPSTIDESP
CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
FVYKSMKEIVRYIEPAVQIDQIIKPLYNFKAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEIKGKYNRAKVFNERIDDMTRNQIETLLDQPFTQGASIRIMPDMHAGKGSVVGTTMTIQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEEEC
DKVVPNLVGVDLGCGMLCTEIKAKRIDFQRLDDLIRELVPSGMNIREKVHPYASELPLEE
HHHCCHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCHHH
VRAPYKLDRALRSVGSLGSGNHFIEVNRDDSGRTFLVIHSGSRHLGVQIADHYQERAIQH
HCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
MMDTHDVKEEIERLKAAGRQQDISAYLETERASRKPFRDLAYVEGADMDDYMHDVRIAQQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHH
YAAANRRAMTDVIVEAMNWNIVDQFDTVHNYIDHDAMILRKGAISAQEGERVIIPMNMRD
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCC
GSLICTGKGNPDWNFSGPHGAGRIMSRSAARKRVDFKEFKRSMEGVWSTSVRPSTIDESP
CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
FVYKSMKEIVRYIEPAVQIDQIIKPLYNFKAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]