| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is 229917745
Identifier: 229917745
GI number: 229917745
Start: 1976214
End: 1976708
Strand: Direct
Name: 229917745
Synonym: EAT1b_2023
Alternate gene names: NA
Gene position: 1976214-1976708 (Clockwise)
Preceding gene: 229917743
Following gene: 229917746
Centisome position: 65.88
GC content: 50.1
Gene sequence:
>495_bases ATGATTGGATTACTCATTGGGATTATCGGTGCCATATGTTTGTGGTGGTTCGAGGCACCGCTTTGGAGCAGCGTCCTGCT TCTCTTGCTTGGAATTGCGTGGTTTATATGGAAAGTAAGGCTGTCGACCATCGACCGCATTGATCGGATGGATGGTCGGG AGTTTGAACTATTTTTAGAGGAAGTGTTCACCGCGCTTGGATATACGGTCACGGTGACTCCGGCATCGCGTGACTTTGGA GCAGACTTGTTACTGGAGACACCGGATGGATGGTCGATTGCCGTTCAAGCAAAGCGTTATGAAAAGACGGTCGGGCTCGA AGCGGTTCAACAAATTGCAGCGGCCGTGCCCTATTATCAAGCACACGAAGGCTGGGTCGTGACGAACTCGAATTTCACGG ACAGCGCATACGAATTGGCGGCGCCAAATCAAGTTCGTCTGATTGCAAGAATGGAGCTTGAAGAACTCTTAAAAGAGGCG GGATATAAGCGATGA
Upstream 100 bases:
>100_bases CAGACGAGCACATCTTCTATATCATTCGACAGATCCCCCTTTCATTTCCTGCCCTCGAAACGGTAAAGTGAGGGAGAGGA CTTGGAAAGGAAAGATGGAG
Downstream 100 bases:
>100_bases GAATAGGCTTGTTCACAAGTTCGACAGAATCCAAATGATGTCGAAAAAAAAGGGTTGTCTTTTTCTTTAAACGATGCAAT AATCATCTTCGTCATATGAA
Product: restriction endonuclease
Products: NA
Alternate protein names: Endonuclease; Type II Restriction Endonuclease Family Protein; Restriction Endonuclease Family Protein; Restriction Endonuclease-Like Protein; Prophage; 5-Methylcytosine-Specific Restriction MRR; Mrr-Like Endonuclease
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MIGLLIGIIGAICLWWFEAPLWSSVLLLLLGIAWFIWKVRLSTIDRIDRMDGREFELFLEEVFTALGYTVTVTPASRDFG ADLLLETPDGWSIAVQAKRYEKTVGLEAVQQIAAAVPYYQAHEGWVVTNSNFTDSAYELAAPNQVRLIARMELEELLKEA GYKR
Sequences:
>Translated_164_residues MIGLLIGIIGAICLWWFEAPLWSSVLLLLLGIAWFIWKVRLSTIDRIDRMDGREFELFLEEVFTALGYTVTVTPASRDFG ADLLLETPDGWSIAVQAKRYEKTVGLEAVQQIAAAVPYYQAHEGWVVTNSNFTDSAYELAAPNQVRLIARMELEELLKEA GYKR >Mature_164_residues MIGLLIGIIGAICLWWFEAPLWSSVLLLLLGIAWFIWKVRLSTIDRIDRMDGREFELFLEEVFTALGYTVTVTPASRDFG ADLLLETPDGWSIAVQAKRYEKTVGLEAVQQIAAAVPYYQAHEGWVVTNSNFTDSAYELAAPNQVRLIARMELEELLKEA GYKR
Specific function: Unknown
COG id: COG1787
COG function: function code V; Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18557; Mature: 18557
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGLLIGIIGAICLWWFEAPLWSSVLLLLLGIAWFIWKVRLSTIDRIDRMDGREFELFLE CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH EVFTALGYTVTVTPASRDFGADLLLETPDGWSIAVQAKRYEKTVGLEAVQQIAAAVPYYQ HHHHHHCCEEEEECCCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCC AHEGWVVTNSNFTDSAYELAAPNQVRLIARMELEELLKEAGYKR CCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MIGLLIGIIGAICLWWFEAPLWSSVLLLLLGIAWFIWKVRLSTIDRIDRMDGREFELFLE CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH EVFTALGYTVTVTPASRDFGADLLLETPDGWSIAVQAKRYEKTVGLEAVQQIAAAVPYYQ HHHHHHCCEEEEECCCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCC AHEGWVVTNSNFTDSAYELAAPNQVRLIARMELEELLKEAGYKR CCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA