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The map label for this gene is scdA [H]

Identifier: 229917622

GI number: 229917622

Start: 1862983

End: 1863690

Strand: Direct

Name: scdA [H]

Synonym: EAT1b_1897

Alternate gene names: 229917622

Gene position: 1862983-1863690 (Clockwise)

Preceding gene: 229917621

Following gene: 229917623

Centisome position: 62.1

GC content: 48.02

Gene sequence:

>708_bases
ATGACACAGACATTCACGGGCGATACGCACGTATCTGAAATCGTCAAACAATGCCCGCAAGCGGCAGACATTTTCAAACG
GAACCGAATCGATTTTTGTTGTGGCGGCAACCGACCACTCGCTGAAGCGACTGACAAATCGAAACGGTCGACGGAAGACA
TTTTAGAAGAAGTTAATGCGCTCTATCAACGTAAGCAAGAGATGAACGAGAAGAGCATCGATTGGGATGCCGCTTCTTCT
TCGGAATTGATTGAGCACATCATTTATAAGCATCACCAATTTTTGACGGACGAATTGCCACAGCTCACACCATATGTGAC
AAAAGTGTTCCGGGTCCACGGACAAAATCATCTGCACCTCGGACGCATTCATCAACTGTTCAATCAATTGAAAGTGGAAC
TTGAACAACATATCGTCAAAGAAGAGACAGAAGACTTCCCGACGTTGCTTCGTCACGAGACCGCACCGACAGCTGAAACG
AGACGGGAGCTTGATGACATCTTGGCCTCGCTCGAGTCAGAACATGCAGCAGCCGGGGACATTTTAAAAGAGTTGCGTCA
GATCACAAACGACTATACGCCGCCTGAAGGAGCGTGTGGGACGTATCGTCTTGTCTATCAACGGTTAGAAGCGCTCGAAT
CGGATACGTTTGAACACATTCATCTCGAAAACAACATTTTATTCCCGCGGGCGCGCGCGTTCGCTTAA

Upstream 100 bases:

>100_bases
CACCTGCATCCTGTTCACTTAAATGTGACGTATTTCACATTTTTGTTGTCGAACTCTTGCTACGCTGAACATGTCAAAAT
GAATATGGAGGTTATGACAG

Downstream 100 bases:

>100_bases
GCAGTGGCACACCCCTACTTACGTAGAGGTGTCTTTTTGTGACGTTTGATACAGATGGGAGGCAAATCAATCGCTACGAT
AAAGGGGAGGCAAAGGAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MTQTFTGDTHVSEIVKQCPQAADIFKRNRIDFCCGGNRPLAEATDKSKRSTEDILEEVNALYQRKQEMNEKSIDWDAASS
SELIEHIIYKHHQFLTDELPQLTPYVTKVFRVHGQNHLHLGRIHQLFNQLKVELEQHIVKEETEDFPTLLRHETAPTAET
RRELDDILASLESEHAAAGDILKELRQITNDYTPPEGACGTYRLVYQRLEALESDTFEHIHLENNILFPRARAFA

Sequences:

>Translated_235_residues
MTQTFTGDTHVSEIVKQCPQAADIFKRNRIDFCCGGNRPLAEATDKSKRSTEDILEEVNALYQRKQEMNEKSIDWDAASS
SELIEHIIYKHHQFLTDELPQLTPYVTKVFRVHGQNHLHLGRIHQLFNQLKVELEQHIVKEETEDFPTLLRHETAPTAET
RRELDDILASLESEHAAAGDILKELRQITNDYTPPEGACGTYRLVYQRLEALESDTFEHIHLENNILFPRARAFA
>Mature_234_residues
TQTFTGDTHVSEIVKQCPQAADIFKRNRIDFCCGGNRPLAEATDKSKRSTEDILEEVNALYQRKQEMNEKSIDWDAASSS
ELIEHIIYKHHQFLTDELPQLTPYVTKVFRVHGQNHLHLGRIHQLFNQLKVELEQHIVKEETEDFPTLLRHETAPTAETR
RELDDILASLESEHAAAGDILKELRQITNDYTPPEGACGTYRLVYQRLEALESDTFEHIHLENNILFPRARAFA

Specific function: Involved in peptidoglycan cross-linking. Required for normal cell growth and development [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scdA family [H]

Homologues:

Organism=Escherichia coli, GI1790654, Length=226, Percent_Identity=33.6283185840708, Blast_Score=130, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 27133; Mature: 27001

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTFTGDTHVSEIVKQCPQAADIFKRNRIDFCCGGNRPLAEATDKSKRSTEDILEEVNA
CCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHH
LYQRKQEMNEKSIDWDAASSSELIEHIIYKHHQFLTDELPQLTPYVTKVFRVHGQNHLHL
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
GRIHQLFNQLKVELEQHIVKEETEDFPTLLRHETAPTAETRRELDDILASLESEHAAAGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ILKELRQITNDYTPPEGACGTYRLVYQRLEALESDTFEHIHLENNILFPRARAFA
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHEECCCCEECCHHHHCC
>Mature Secondary Structure 
TQTFTGDTHVSEIVKQCPQAADIFKRNRIDFCCGGNRPLAEATDKSKRSTEDILEEVNA
CCCCCCCHHHHHHHHHCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHH
LYQRKQEMNEKSIDWDAASSSELIEHIIYKHHQFLTDELPQLTPYVTKVFRVHGQNHLHL
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
GRIHQLFNQLKVELEQHIVKEETEDFPTLLRHETAPTAETRRELDDILASLESEHAAAGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ILKELRQITNDYTPPEGACGTYRLVYQRLEALESDTFEHIHLENNILFPRARAFA
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHEECCCCEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA